Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq10 168 1e-36 seq1 98.7 2e-15 >seq10 Length=415605 Score = 168 bits (186), Expect = 1e-36 Identities = 452/682 (66%), Gaps = 13/682 (2%) Strand=Plus/Plus Query 221819 TTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATC 221878 || || ||||||||||||||||| |||||| ||| ||||| | ||| ||| | || || Sbjct 14551 TTCGCGGCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCGACCTGGGCCTCAAGGATG 14610 Query 221879 TTGTCCCAGAGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATA 221937 || ||| | | |||| || | || | |||| | |||||| ||| || || Sbjct 14611 GCGTACCACAACT-TCTGCGCCGAGATTGTACGCTTGGCGCGACCCTC---CTTCTCGTA 14666 Query 221938 C--CCGGTATAGAGCA-TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCT 221994 | | | | || || || |||| || ||||| | |||| ||||| || | ||| Sbjct 14667 CTTCTCGAAGAGCGCCCTG---AACTCGTCGCCGTAGACGTCGTGGAGGCCGGG-CGCCT 14722 Query 221995 G-GCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCG 222053 ||||| || | ||| ||| | ||| | | ||| | | |||||| ||||| | Sbjct 14723 CAGCGGGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCGG 14782 Query 222054 GGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCC 222113 ||||||||||||| ||||| |||| | || || ||| ||||| ||| || | Sbjct 14783 GGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGC 14842 Query 222114 TCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGC 222173 || || | || || || ||||| |||||||||||||| || |||| || | |||| Sbjct 14843 GGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGC 14902 Query 222174 CGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGG 222233 |||||||||||||||| || || ||||| | | || |||||||| ||| || Sbjct 14903 CGGGTCGCTTGTTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCA 14962 Query 222234 TCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCA 222293 | || || | || || || ||||| ||||| ||||||| |||| || | | Sbjct 14963 TAGGCACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGA 15022 Query 222294 GGTTACTGGCAGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGA 222353 ||| || | ||||| || || || || ||||| | ||||| |||||| Sbjct 15023 TGTTGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGA 15082 Query 222354 GAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACA 222413 | ||||| |||||| || || ||||| |||| | | | | || || || ||||| | Sbjct 15083 GCGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGA 15142 Query 222414 TCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCC 222473 || | | | || || |||||| ||||||||||| ||||| || ||||||| | Sbjct 15143 GTTGCGGGTGAGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCT 15202 Query 222474 TAGACATCAGATCGTACGTCTC 222495 ||||||| | ||| || || Sbjct 15203 CCGACATCAAGTTGTAGGTTTC 15224 >seq1 Length=1017535 Score = 98.7 bits (108), Expect = 2e-15 Identities = 209/318 (66%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 25984 AACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACG 26043 |||||||||||| | |||||||||||||||| || |||||||||||||||| | || Sbjct 201093 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTGCTCTTCTCG 201034 Query 26044 GGCCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTG 26103 || | | || ||| | || || ||| | | |||||| ||||| || Sbjct 201033 CACCTCGAACGCCG---ACCGCACCCCGACACGGTCGAGCGCATCATCCGCGAGGCGGTC 200977 Query 26104 GAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAAC 26163 | ||||||| | ||||| | | ||||||||| | Sbjct 200976 GCGATCGAGCAAGAGTTCCTGACGGACGCGTTGCCGGTCAAGCTGATCGGCATGAACT-C 200918 Query 26164 AGAC-TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACT 26222 ||| ||||| |||| ||||| |||| ||| ||||||| |||| | ||| || Sbjct 200917 GGACCTCATGTGCCAGTACATCGAGTTTGTCGCCGACCGGTTGCTCGTCGCGCTCGGCAA 200858 Query 26223 CGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGG 26282 || | | |||| || |||||||||||||||||||||| | || ||| |||| || Sbjct 200857 CGAAAAGATTTACAAGGCGACTAACCCGTTCGACTTTATGGACATGATCTCGATGGAGGG 200798 Query 26283 GAAGACCAACTTCTTTGA 26300 |||||||||||||| || Sbjct 200797 CAAGACCAACTTCTTCGA 200780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842988752640