Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq61 226 4e-54 seq30 187 3e-42 seq13 161 1e-34 >seq61 Length=92854 Score = 226 bits (250), Expect = 4e-54 Identities = 709/1097 (65%), Gaps = 6/1097 (1%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 || || || || ||||| ||||| | | |||||||||||||| || || | | | | Sbjct 2012 CCGGAGGAGATCTCGTCGATGGTCCTCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTC 2071 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 || || || | | || || || || || || || ||||||| || || || || Sbjct 2072 GGAGGCACCGTCAGCAACGCCGTCGTCACCGTCCCGGCCTACTTCAACGACTCGCAGCGC 2131 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 |||||||| |||||||| | | | || |||| || ||| || | || ||||| || Sbjct 2132 CAGGCGACCAAGGACGCCGGTACCATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAG 2191 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || || || || || || |||||||| || | || || || || Sbjct 2192 CCGACCGCCGCCGCGATCGCGTACGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTC 2251 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | |||||||| | || || || ||||| || ||||| || |||| || || | || Sbjct 2252 CTCATCTTTGACTTGGGCGGCGGCACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGC 2311 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCA 195991 || ||||| || ||||| ||||| ||||| || || || || ||||| || || || Sbjct 2312 ATCTTCGAGGTCAAGGCGACTGCCGGTGACACCCACCTCGGCGGTGAGGACTTTGACAAC 2371 Query 195992 CGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGA 196051 || || || || || | | |||||| || ||||| ||||| || | | Sbjct 2372 CGCCTCGTCACCCACTTCTGCGCCGAGTTCAAGCGCAAGAACAAGAAGGACCTCACGTCC 2431 Query 196052 AATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCT 196111 || | | || || || || || | || || || || || ||||| || || ||||| Sbjct 2432 AACGCCCGCGCCCTCCGCCGTCTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTCTCG 2491 Query 196112 TCTACGGCTCAAACAATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACA 196171 || | || || || | | ||||| || ||| | || || || || ||||| || || Sbjct 2492 TCGGCCGCCCAGACCACCATCGAGATCGACTCGCTCTTCGAGGGCATCGACTTTTACACC 2551 Query 196172 ACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAA 196231 | || ||||| || || || || ||| | | | || ||||| | ||||| Sbjct 2552 TCGATCACCCGCGCCCGGTTCGAGGAGCTCTGCGCCGACTTGTTCCGCGGCACCATGGAG 2611 Query 196232 CCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTC 196291 || || || | || || || ||| | ||||| || ||| ||| | || |||||| Sbjct 2612 CCGGTCGAGAAGGTCCTCCGCGACTCGAAGATTGACAAGCAGTCGGTCAACGAGATTGTC 2671 Query 196292 CTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAAT 196351 || || || || || |||||||| ||| | || || | | || ||| ||||| Sbjct 2672 CTCGTCGGCGGTTCGACCCGTATCCCGCGTGTCCAGAAGCTCGTGTCCGACTTTTTCAAC 2731 Query 196352 AATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTT 196411 || || ||||| ||||||||||||| || || || || || || || ||||| Sbjct 2732 GGCAAGGAGCCCAACAAGTCGATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTC 2791 Query 196412 CAGGCTGCTATTCTCTCAGGTGTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTT 196468 ||||| || || ||| | || |||| | || ||| || || || || || Sbjct 2792 CAGGCCGCCATCCTCACCGG---CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTC 2848 Query 196469 GATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATT 196528 || || || || | || ||| | || || || || ||||| ||||| || | || Sbjct 2849 GACGTCGCCCCGCTCTCGACCGGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATC 2908 Query 196529 GATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAAT 196588 | ||||| || | ||||| |||||| | ||| || || || |||| || Sbjct 2909 CCCCGCAACACGACCGTCCCGACCAAGAAGTCCGAGACCTTCTCGACCTACGCCGACAAC 2968 Query 196589 CAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCAT 196648 || || || || | || || || || || || || || |||| | ||||| ||| | Sbjct 2969 CAGCCGGGCGTCCTGATCCAGGTCTACGAGGGCGAGCGTGCCCGCACCAAGGACAACAAC 3028 Query 196649 CTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATT 196708 || || |||| ||||| | |||| || || | || ||| | ||||| || ||||| Sbjct 3029 CTCCTCGGAAAGTTCGAGCTCTCGGGCATCCCCCCCGCGCCCCGCGGTGTCCCCCAGATC 3088 Query 196709 AATGTTTGCTTCGATAT 196725 | || |||||| || Sbjct 3089 GAGGTCGTCTTCGACAT 3105 >seq30 Length=195187 Score = 187 bits (206), Expect = 3e-42 Identities = 169/213 (79%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 ||||||||||||||| || ||||| || || || || ||||| |||||||| |||||||| Sbjct 194808 TATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTC 194867 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 ||||| ||||| ||| |||| |||||||| || || ||||| ||||| || ||||| || Sbjct 194868 CGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCA 194927 Query 171981 GCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAA 172040 ||| || || || || || || || ||||| || || || || |||||| | |||||||| Sbjct 194928 GCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAA 194987 Query 172041 CGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | | || |||||||| || || ||||| || || Sbjct 194988 CATCCAGAAGGAGTCGACCCTTCACCTCGTCCT 195020 >seq13 Length=349228 Score = 161 bits (178), Expect = 1e-34 Identities = 161/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171881 CCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCA 171940 |||| || || || || |||||||||||||| |||||||| ||||| ||||| ||| ||| Sbjct 151708 CCCTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCA 151767 Query 171941 AAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTG 172000 | |||||||| || || ||||| ||||| || ||||| ||||| || || || ||||| | Sbjct 151768 AGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCG 151827 Query 172001 GTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTC 172060 | || ||||| || || || || || ||| | || |||||| | || |||||||| || | Sbjct 151828 GCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCC 151887 Query 172061 TACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 | ||||| || || | | || |||||| Sbjct 151888 TCCACCTCGTCCTCCGCTTGCGCGGTGGT 151916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861117168320