Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10 122 8e-23 seq45 120 3e-22 seq30 89.7 5e-13 seq13 87.8 2e-12 >seq10 Length=415605 Score = 122 bits (134), Expect = 8e-23 Identities = 432/662 (65%), Gaps = 25/662 (4%) Strand=Plus/Plus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGAC 139360 ||||||||| ||| |||| | ||| |||| | |||||| |||| || || | Sbjct 14661 CTCGTACTTCTCGAAGAGCGCCCTGAACTCGT-CGCCGTAGACGTCGTGGAGGCCGGGCG 14719 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 || | || || | |||| ||| || ||||| || |||||| ||||||||| | Sbjct 14720 CCTCAGCGGGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGT 14779 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATC--GCGCGCCTTCTTATCTTCCGAACCCATGTT 139478 | || ||||||| ||||| | | || |||||| ||| ||||| || ||| Sbjct 14780 CGGGGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTT--CTTCCTTGCCGTGGTT 14837 Query 139479 ACGTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCC 139536 || | | || ||||| || || | ||| |||||||| || || || ||||| || Sbjct 14838 C--TTGCGGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCG 14895 Query 139537 ATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACG 139593 | ||||| || ||| || ||||| || |||| || | | || ||||| ||| Sbjct 14896 AACGCGCCGGGTCGCTTGTTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACG 14955 Query 139594 CGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTG 139650 || | ||| ||| | | || ||| ||||| |||| |||| | || | | Sbjct 14956 CGGAGCATAGGCACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTC 15015 Query 139651 CGAGCTCGGACGTCATGTACATTGATG--CCGATTCCGCCGCCAAATTTGGATATTAAAA 139708 || |||| || ||| || || ||||| ||||| || ||||| || | Sbjct 15016 ---GCGCGGATGT--TGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCG 15070 Query 139709 CGCAA-TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGA 139767 ||||| || | | || ||||| || ||| || |||||||||||| ||||| || Sbjct 15071 CGCAAGTCTTG-AGCGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGG 15129 Query 139768 AAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGC 139827 ||||| ||||| |||||||| | || ||||| ||||| || || |||||| Sbjct 15130 AAGCAGGACGAGAGTTGCGGGTGAGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGA 15189 Query 139828 GTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCG 139887 ||||| | | ||||||||| | ||| |||||||| || | | || || |||| Sbjct 15190 GTGAAGTAGCGCTCCGACATCAAGTTGTAGGTTTCGATAGCACGCTTGATGTCGGGTCCG 15249 Query 139888 TGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCG 139947 ||||| ||||| | || ||||| ||||| || || || || ||||| ||| ||| Sbjct 15250 TGGATGCCGACGGCAACGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTGCCGTCG 15309 Query 139948 AT 139949 || Sbjct 15310 AT 15311 >seq45 Length=127924 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || || || | Sbjct 122 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 181 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 182 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 241 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||||||||| || ||||| ||||| | | | | || ||||| ||| Sbjct 242 CAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 301 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || ||||| ||||| || |||||||| Sbjct 302 ATCCAGAAGGAGTCGACCCTCCACTTGGT 330 >seq30 Length=195187 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || |||||||| || || || | Sbjct 195037 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 195096 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || ||||| || Sbjct 195097 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 195156 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCT 24852 || || |||||||||||||| || ||||| Sbjct 195157 CAGCGCTTGATCTTTGCCGGCAAGCAGCT 195185 >seq13 Length=349228 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 24725 CTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAA 24784 || || || || || || || ||||| || || | ||||||| | || | || || Sbjct 151710 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAG 151769 Query 24785 CAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGG 24844 |||||||| ||||| || || || || ||||| || || ||| | ||||||||||| Sbjct 151770 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGC 151829 Query 24845 AAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTA 24904 || ||||| ||||| | | | || || || ||||| || ||||| ||||| || Sbjct 151830 AAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 151889 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| | || | || |||||||| || Sbjct 151890 CACCTCGTCCTCCGCTTGCGCGGTGG 151915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896722699680