Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq10 199 6e-45 seq1 168 1e-35 seq6 154 2e-31 seq9 123 4e-22 seq29 96.9 5e-14 >seq10 Length=415605 Score = 199 bits (220), Expect = 6e-45 Identities = 202/263 (77%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| || || |||||||||| ||| |||||||||||||| ||||| | ||| || || Sbjct 14923 TGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGCCATTCGAG 14982 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 | |||||| ||||| || | ||| | || | ||||| | ||||| | || ||| Sbjct 14983 TAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGAATCGAAAGACCG 15042 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 || ||||| || | |||||||||||||||||| | || ||||| ||||||||||| ||| Sbjct 15043 ATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGTAGATGCCTTCG 15102 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 ||||||||| ||| |||| | || ||||| |||||| ||||||| | | || ||| Sbjct 15103 ATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGTGAGGGGTACCG 15162 Query 2073781 GCATTGAAGAGCGTGGGCGTCGC 2073803 || ||||| |||||||||| ||| Sbjct 15163 GCGTTGAACAGCGTGGGCGACGC 15185 Score = 143 bits (158), Expect = 4e-28 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 2071781 CGGCGCCGTGGCACTCGTGCAGGCCGGGCGCCTCGGACGGGCAAAAGAGCGACCAGTCGC 2071840 || |||||| | ||||| |||||||||||||| | ||||| || |||| ||| ||| Sbjct 14690 CGTCGCCGTAGACGTCGTGGAGGCCGGGCGCCTCAGCGGGGCAGAACAGCGGCCACTCGG 14749 Query 2071841 CGCCAGTCACCACGCGGCGCATAAACAGGTCGCACGTCCACAGGCCGTAAAAGAGATCGC 2071900 || | | ||||| ||| ||||||||| ||||||| || | ||||| || | Sbjct 14750 CGTTCTGCTCGACGCGTTCCATGAACAGGTCGGGGATCCACAGCGCGAAGAAGAGGTCTC 14809 Query 2071901 GCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGG 2071960 |||| ||| || ||||||||||||||||| |||||||| |||||| || ||||| Sbjct 14810 GCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGATGTCGG 14869 Query 2071961 CGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 ||||||||||||| |||||| || || ||||| |||||| ||| || Sbjct 14870 CGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTGTTGCCTCC 14921 Score = 132 bits (146), Expect = 8e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| ||||| ||||| ||||| | ||| || | |||||||| ||||||||| | Sbjct 169936 CTCGAAGAAGTTCGTCTTTCCCTCCATCGAAATTAGTTCCATCCAATCGAACGGGTTCTC 169995 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 ||| |||| |||| ||| |||||||| | || || ||||| || || | || || Sbjct 169996 CGTGTGGTAAAGCTTATCGTTCCCGAGCGCGACGAGTAGCCGGTCCGCAACACACTCGAT 170055 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGAC 794104 |||||||||||| | | | |||||| ||||| | || || ||||||| ||| | | Sbjct 170056 GTACTGGCACATCAACGATGAGTTCATACCGATCAAGGCGACAGGCAGCGCGTCGGTCAA 170115 Query 794105 AAACTCTTTCTCGATCTCGACGGCCTCGATGATGAT 794140 ||||| || ||||||||||| || ||| |||||| Sbjct 170116 GAACTCCTTTTCGATCTCGACCGCTTCGGCGATGAT 170151 Score = 100 bits (110), Expect = 5e-15 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 2070052 GCCGCATGGTAGATCGTCTCAAAGATGGTGCGGTTGAGGCGACGCGCG-CCGGCGCTCTC 2070110 || |||||||||||||| |||||||| | ||||||| |||| || |||||| || Sbjct 14033 GCAGCATGGTAGATCGTTTCAAAGATCTGGAGGTTGAGCTGACGGGCTTCCGGCGAG-TC 14091 Query 2070111 CCACGGCAGGTCCAT---CATGGCAAACGCGTCGGCCAGGCCCTGCACGCCGACGCCCAT 2070167 | ||||| | |||| || |||||||| || || |||||||| || || || Sbjct 14092 GAAGGGCAGACGGAGGGCCATG---AAGGCGTCGGCGAGACCTTGCACGCCCACACCGAT 14148 Query 2070168 CGGCCGGTGGCGCAGGTTCGAGTGCCGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGAT 2070227 ||| |||||||||| ||| || ||||| || ||||||| ||||| |||||| Sbjct 14149 CGGGCGGTGGCGCATGTTGCTTCGCTCCGCCTCCTTGACGGGGTAGTAGTTGACGTCGAT 14208 Query 2070228 CACGCGGTTGAGGTTG 2070243 | ||||||||||||| Sbjct 14209 GATGCGGTTGAGGTTG 14224 Score = 89.7 bits (98), Expect = 8e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 794379 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAA 794438 |||||||||||| ||||||||||||||||||||||||| | ||| || ||||| || Sbjct 170322 GCCGGGCATGAGCCCGCGCTTCTTGAGCCAAAAGATGGAAGCGAACGATCCGGAGAAGAA 170381 Query 794439 GATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCG 794475 ||| |||||||| || || || ||| || |||||| Sbjct 170382 GATCCCCTCGACCGCTGCGAACGCGATTAGTCGCTCG 170418 >seq1 Length=1017535 Score = 168 bits (186), Expect = 1e-35 Identities = 214/292 (73%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 793925 CTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTGGC 793984 |||||| ||||||||||||||||| | |||||||| ||||| | ||||||||| | Sbjct 200779 CTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTAGT 200838 Query 793985 CGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAAT 794044 || | ||| ||| ||| ||||||| | |||| ||||||||||| || || || Sbjct 200839 CGCCTTGTAAATCTTTTCGTTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTCGAT 200898 Query 794045 GTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGAC 794104 |||||||||||||||| | | |||||||||||| ||| || |||| || || | | Sbjct 200899 GTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACCGGCAACGCGTCCGTCAG 200958 Query 794105 AAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACGTCGGACGACGG 794164 ||||||| ||||||| |||| |||||| |||||| || | | ||||| ||| Sbjct 200959 GAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCGACCGTGTCGGGGTGCGG 201018 Query 794165 CTTGTCG-ACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACC 794215 | | || |||| || | |||||||||||||||||||| || ||||| Sbjct 201019 -TCGGCGTTCGAGGTGCGAGAAGAGCAGGCAGGCAAAGTCGGTGTGGAGACC 201069 Score = 107 bits (118), Expect = 3e-17 Identities = 129/175 (74%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 ||| || |||||||| ||||||||||||||||| ||||||| | ||| ||||||||| Sbjct 201188 GAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAACGAGCCCGAGAA 201247 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 |||||||||||||||||||| || |||| || || || |||| || | || || Sbjct 201248 GAAGATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACCAAAGATGGACCGG---TC 201304 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTG 794550 | ||||||| ||| ||||| || || || ||| | | |||| || ||| Sbjct 201305 GTCCGAGATCCACCGCATAGCCCAGTCGGCTTTCTTCTTGATGCAGGGGACTGTG 201359 Score = 102 bits (112), Expect = 1e-15 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 2019182 GAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATGAGGCCGACTG 2019241 ||||| | || ||| |||| ||| || |||||| | |||||||||| || ||||||| Sbjct 837245 GAAAAAAGTCACCCTCCCGCTCGGGCGGCACAAGCTCGTCATCCTCGACGAAGCCGACTC 837186 Query 2019242 CCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGAC 2019301 | ||| | | || |||||||||||||| || |||||| |||| | |||||||| Sbjct 837185 GATGACGACCGGCGCGCAGCAGGCCCTCCGCCGCACGATGGAACTGTACTCGAACACGAC 837126 Query 2019302 GCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTG 2019361 ||||| || || || |||||| | | |||||||| | ||||| | || Sbjct 837125 CCGGTTCGCACTCGCGTGCAACCAGAGCAACAAAATCATCGAACCGATCCAGTCGAGGTG 837066 Query 2019362 CGCCATCTTGCGCTTTGCGCGCCTCACCGAC 2019392 ||||||||||| | || ||||| | |||| Sbjct 837065 TGCCATCTTGCGGTACGCCCGCCTGAGCGAC 837035 >seq6 Length=667699 Score = 154 bits (170), Expect = 2e-31 Identities = 214/297 (72%), Gaps = 2/297 (1%) Strand=Plus/Plus Query 429510 CTCCAGATCGGGTGGACCGTCGAGCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAAC 429569 |||||| |||||||| ||||||||||||||| ||||||| || | | ||| Sbjct 470044 CTCCAGTACGGGTGGATCGTCGAGCGCCACCTCAAGGACGGCGACATTGTCTTGTTCAAC 470103 Query 429570 CGGCAGCCGTCGCTCCACATGGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCGG- 429628 ||||| |||||||| |||| | ||||||| | ||| || || |||||| Sbjct 470104 CGGCAACCGTCGCTGCACAAGATGTCGATGATGGCGCACCGCGTCAAGCTCATGCCGTAC 470163 Query 429629 TCGCACCTTCCGGCTCAACCTGGCCGTGACGGGCACCTACAACGCCGACTTTGACGGCGA 429688 ||| ||||||||||||||| || | || ||| | ||||||||||| || |||||||| Sbjct 470164 TCG-ACCTTCCGGCTCAACTTGTCGGTCACGTCGCCGTACAACGCCGATTTCGACGGCGA 470222 Query 429689 CGAGATGAACCTGCACGTGCCCCAGTCGGAGATGGCACGCGCCGAAGTCGCCCACACCAT 429748 |||||||||| |||||||||| |||||||| | | || ||||| | | ||| Sbjct 470223 CGAGATGAACTTGCACGTGCCGCAGTCGGAAGAGACCCGAGCCGAGTTGATCAACATTTG 470282 Query 429749 GGGCGTGGCCCTCAAGGCCGTGTCGCCGCAGGCCAACAAGCCCATCATCGGGCTCGT 429805 | ||| | | ||| | | ||||||||||||||||||||| |||| || |||| Sbjct 470283 CGCCGTCCCGCGCAACATCATCTCGCCGCAGGCCAACAAGCCCGTCATGGGTATCGT 470339 Score = 98.7 bits (108), Expect = 2e-14 Identities = 101/129 (78%), Gaps = 5/129 (4%) Strand=Plus/Plus Query 428572 CGACCAACTCGCACCCGTCGTGGATGATCATCACCGTGCTCCCGGTGCCGCCGCCCATCG 428631 ||||| | |||||||||||||||||||| | ||||| || ||||||||||| || || Sbjct 469445 CGACCGAGGCGCACCCGTCGTGGATGATCCTGACCGTCCTGCCGGTGCCGCCTCCGCCCG 469504 Query 428632 TGCGGCCGTCGATCACCG-AGACCGAGGGATCGCGGTCGCGCGGCCAGGACGACCTCACG 428690 |||| ||||||||| | | ||| | || |||| | ||||||| |||||||| | ||| Sbjct 469505 TGCGCCCGTCGATCTCGGTCGACGGCGG---CGCGAT-GCGCGGCGAGGACGACTTGACG 469560 Query 428691 CACAAACTC 428699 |||| ||| Sbjct 469561 TACAAGCTC 469569 Score = 96.9 bits (106), Expect = 5e-14 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 429059 GGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAATTGCATGGGCAAGCGCGTCAA 429118 || ||| |||||||||| || || ||| | |||||||| | ||||||||||||||| | Sbjct 469749 GGCGCGGCTCAAGGGCAAAGAAGGGCGGTTGCGCGGCAACTTGATGGGCAAGCGCGTCGA 469808 Query 429119 CTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAATCGACATTGACGAGGTGGGCGT 429178 |||| | ||||| ||||||||| ||||||| | | | | ||||| || ||||| Sbjct 469809 CTTTTCCGCGCGAACCGTCATCACCGGCGACCCCAACTTGGCGCTCGACGAAGTCGGCGT 469868 Query 429179 GCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCGCGTGACGCC 429226 || | ||||| | ||| | |||| || |||||||| ||||| Sbjct 469869 CCCGTTCTCGATCGCGAGGACTTTGACCTACCCGGAGCGCGTCACGCC 469916 Score = 91.5 bits (100), Expect = 2e-12 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 431099 CGGGCGCGAGGGTCTCGTCGACACGGCCGTCAAGACGGCCGAGACGGGCTACATCCAGCG 431158 ||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 471333 CGGACGAGAGGGTCTCATCGACACGGCCGTCAAGACGGCCGAGACGGGATACATCCAGCG 471392 Query 431159 TCG 431161 || Sbjct 471393 ACG 471395 >seq9 Length=451146 Score = 123 bits (136), Expect = 4e-22 Identities = 185/255 (73%), Gaps = 21/255 (8%) Strand=Plus/Plus Query 2411415 CATCTTGCCGTCCTTGGTGAGGCCCGGCACCAGCGGGTTGAGCAGGTGGATGCGCTTGCG 2411474 |||||||||| || | |||||| ||||||| | ||| | |||||| |||||| Sbjct 13609 CATCTTGCCGCCC---GAGAGGCCGGGCACCATCAAGTTCATGAGGTGGGACCGCTTGGT 13665 Query 2411475 GTAGCCCAGCGCCGGCAGGT---GGTCGCGCGCAAAGGCAAAGATCTTGCGCTGGTCG-C 2411530 |||||| | | ||||||| | ||| || ||| ||||||||||||||||||| | Sbjct 13666 GTAGCCAATCTTGGGCAGGTACTGTTCG---GCGTAGGTAAAGATCTTGCGCTGGTCGAC 13722 Query 2411531 GCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGT 2411590 |||| || |||||| ||| ||| |||||| || ||||||||| ||||||| |||||||| Sbjct 13723 GCCC-CCGAACTGGAAGTCAACGCCGAGGTACTCCTCGTCGAGCGCCTGCAGGAGCGGGT 13781 Query 2411591 AGACGAGGTTG---CTGAGCGGCGGGTTGCG-GTCCATCTTGACCACCTGGGCGGCGGCC 2411646 | | ||| | |||||||| || | || |||||| || | |||| ||||| Sbjct 13782 ACAACAGGCCGGACAGGAGCGGCG----ACGAGACCTGCTTGACGACTTCGGCGCCGGCC 13837 Query 2411647 TTTTGCGC--CGTGC 2411659 || |||| ||||| Sbjct 13838 TTGCGCGCGTCGTGC 13852 >seq29 Length=197879 Score = 96.9 bits (106), Expect = 5e-14 Identities = 117/156 (75%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 653648 CCCGAGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGCAGCGTG 653707 |||||| | |||||||| | |||| || ||||| || ||||| || | || | | Sbjct 181079 CCCGAGATTGGCGACAAGTTTGCGTCTCGACACGGTCAGAAGGGAACGATCGGTATCACC 181020 Query 653708 CGCTCGAC-CGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCAT 653766 | || | |||||| ||||||| ||| | || |||| |||||||||| | |||| Sbjct 181019 TAC-CGTCACGAGGACATGCCGTTTTCGGC---CGAGGGCATCACGCCCGACTTGATCAT 180964 Query 653767 CAACCCGCACGCCATCCCGTCGCGCATGACCATGGG 653802 |||||||||||||||||||||||||||||| || || Sbjct 180963 CAACCCGCACGCCATCCCGTCGCGCATGACGATCGG 180928 Score = 93.3 bits (102), Expect = 7e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 652886 ACGCACGTCGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTT 652945 |||||| |||| | ||||| | || || ||| |||||| ||||||||||| || Sbjct 181784 ACGCACTGCGAGATCCACCCCGCCATGATCCTCGGCATCTGCGCGTCCATCATCCCGTTC 181725 Query 652946 TCCAACCACAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 652999 || ||||||||||| ||||||| |||| ||||||| ||||||||||||||| Sbjct 181724 CCCGACCACAACCAGTCGCCGCGAAACACGTACCAGAGTGCCATGGGCAAGCAG 181671 Score = 89.7 bits (98), Expect = 8e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 654002 TACTACCAGGCCCTGCGCCACGTGGCCATCGACAAGATCCACGCCCGGCCGCGCGGCCCC 654061 ||||||||| ||| ||| ||| | |||||||||||||||||| | || || || Sbjct 180728 TACTACCAGCGACTGAAGCACATGGTCGGCGACAAGATCCACGCCCGTGCACGAGGACCG 180669 Query 654062 GTGCAGATGCTCACCAAGCAGCCGGTCGAGGGCCGGTCGCGCTCGGGCGGCTTTCGCCTC 654121 || ||||| | || | ||||||||||||||| |||||| | || || || || || Sbjct 180668 GTCCAGATCTTGACGAGGCAGCCGGTCGAGGGTCGGTCGAGGGACGGAGGTTTGCGATTC 180609 Query 654122 GGAGAGATGGAG 654133 |||||||||||| Sbjct 180608 GGAGAGATGGAG 180597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916229805568484