Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq45 136 3e-27 seq30 134 9e-27 seq13 105 4e-18 seq17 95.1 8e-15 >seq45 Length=127924 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||||||||| ||||| || ||||| ||| |||| | || Sbjct 333 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 274 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||||| || |||||||| |||| | ||||||||||| Sbjct 273 TCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 214 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || || |||||| || | || || ||| Sbjct 213 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 154 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||||||||| || |||||||||||| Sbjct 153 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 121 >seq30 Length=195187 Score = 134 bits (148), Expect = 9e-27 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| ||| ||||||||| ||||| || ||||| ||| |||| | || Sbjct 195020 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 194961 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||||||||| || || |||||||| |||| | ||||||||||| Sbjct 194960 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 194901 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | |||||| || | || || ||| Sbjct 194900 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTC 194841 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| |||||||| |||||||| ||||| Sbjct 194840 TTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 194809 Score = 95.1 bits (104), Expect = 8e-15 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 || ||||| ||||| ||||||| || |||||||| |||| | ||||||||||| | Sbjct 195185 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 195126 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || |||||| | |||| || || |||||| || | || || ||||| Sbjct 195125 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTG 195066 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||||||||||||| || |||||||||||| Sbjct 195065 CCCGTGAGGGTCTTGACGAAGATCTGCATG 195036 >seq13 Length=349228 Score = 105 bits (116), Expect = 4e-18 Identities = 139/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||| ||||| |||||||| || |||| | || Sbjct 151900 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCC 151841 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| ||||| ||||| || || |||||||| | || | ||||||||||| Sbjct 151840 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 151781 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | |||| || | |||||| || | ||| || ||| Sbjct 151780 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTC 151721 Query 34946 TTTCCCGTGAGGG 34958 || |||||||||| Sbjct 151720 TTGCCCGTGAGGG 151708 >seq17 Length=321613 Score = 95.1 bits (104), Expect = 8e-15 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 34760 AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGC 34819 |||| ||||| ||||| | ||| ||||||||| ||||| |||||||| ||| |||| Sbjct 237420 AACCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGG 237361 Query 34820 TCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCC 34879 | || || || ||||| ||||| ||||| || || |||||||| | || | |||||| Sbjct 237360 CCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCC 237301 Query 34880 TTGTC 34884 ||||| Sbjct 237300 TTGTC 237296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692180776564