Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq30 96.9 7e-15 seq45 95.1 2e-14 seq13 86.0 1e-11 >seq30 Length=195187 Score = 96.9 bits (106), Expect = 7e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || | ||| || || || || ||||| || || ||||| || || | | || Sbjct 195024 ACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCC 194965 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||| || || || || || || ||||| || | || || || || || || || ||||| Sbjct 194964 GTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTT 194905 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || || || || || ||||| || | || || || | || || Sbjct 194904 GTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGAT 194845 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||| |||| ||||| ||||| || ||||| Sbjct 194844 CGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 194809 >seq45 Length=127924 Score = 95.1 bits (104), Expect = 2e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || ||||| || || || || ||||| || || ||||| || || | | ||| Sbjct 336 CGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCG 277 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| | | || || || || || || || ||||| Sbjct 276 TCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTG 217 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || ||||| || | || || || | || ||| Sbjct 216 TCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATC 157 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| || || |||||||| Sbjct 156 GTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 122 >seq13 Length=349228 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | ||| || || || | ||| || || || || ||||| || || || || | Sbjct 151917 TACCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 151858 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||||| || || || || || |||||||| || | || || || || | Sbjct 151857 AGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGG 151798 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || || ||||| || | || | Sbjct 151797 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 151738 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGT 82786 | || | || ||||||||||| || Sbjct 151737 CCTCGAGGGTGATCGTCTTGCCCGT 151713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825237572884