Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq10 219 4e-52 seq1 161 1e-34 seq30 132 5e-26 seq45 125 7e-24 seq13 113 4e-20 seq17 96.9 3e-15 >seq10 Length=415605 Score = 219 bits (242), Expect = 4e-52 Identities = 459/665 (69%), Gaps = 23/665 (3%) Strand=Plus/Plus Query 149033 GCGACCCTCCTGCTCGTA--TAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCG 149090 ||||||||||| |||||| | | | | ||| || |||| | ||||||||| ||| Sbjct 14649 GCGACCCTCCTTCTCGTACTTCTCGAAGAGCGCC-CT-GAACTCGTCGCCGTAGACGTCG 14706 Query 149091 TCGAGACCGGGGCACTTGTGCGGG-CACATGAGCGACCACACGCCGTCCGCGTACACGCG 149149 | ||| ||||| | | | ||||| || | |||| |||| || ||| | | ||||| Sbjct 14707 TGGAGGCCGGG-CGCCTCAGCGGGGCAGAACAGCGGCCACTCGGCGTTCTGCTCGACGCG 14765 Query 149150 CTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTC 149209 | ||| ||||| ||||| | ||| |||||| | | |||||| ||||| | ||||| Sbjct 14766 TTCCATGAACAGGTCGGGGATCCACAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTC 14825 Query 149210 GGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAAT 149269 ||| ||| ||| |||| ||| | | ||| ||||| |||||||||||||||| Sbjct 14826 CTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCAAG 14885 Query 149270 GTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGTCGACGTGGCGCACCATGTT 149326 ||| | ||||| |||||| ||| ||||| || ||||| |||| ||| || |||| Sbjct 14886 GTAGATCGCGAACGCGCCGGGTCGCTTGTTGCCTCCTTGGTCCACGTAACGCGCCGTGTT 14945 Query 149327 GTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG- 149384 ||| || || || | |||||| | |||||| | | ||| |||||| || | ||| Sbjct 14946 GTTGAAGACGCGGAGCATAGGCACGATGCCATTCG-AGTAGCCGTTCGTGCCGGCGATGT 15004 Query 149385 -CGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCG-CCGCCGTACTTTG 149442 ||| ||| ||| || | ||||| | | ||||| ||| |||| || ||| | Sbjct 15005 ACGA--ACCGGTCGCGCGGATGTTGTGAATCGAAAGACCGATCCCGCCCGCAGT-CTTGG 15061 Query 149443 AGATGGCCGCGC-AGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATG 149501 ||||| ||||| |||| |||||| ||||||||| ||||| |||| || |||| Sbjct 15062 AGATGAGCGCGCAAGTC-TTGAGCGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATG 15120 Query 149502 GTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGG 149561 || | || ||||| || | | |||||| | | || ||||| ||||| ||||| Sbjct 15121 GTGACGAGGAAGCAGGACGAGAGTTGCGGGTGAGGGGTACCGGCGTTGAACAGCGTGGGC 15180 Query 149562 CTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCG--AGCACGCGGTCCA 149619 ||||| || || || || ||||| | ||| | ||| ||||||| | | Sbjct 15181 GACGCGTGAGTGAAGTAGCGCTCCGACATCAAGTTGTAGGTTTCGATAGCACGC--TTGA 15238 Query 149620 TGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCA 149679 |||| || |||||||| | ||| |||||||| ||||| ||||| || |||||||||| Sbjct 15239 TGTCGGGTCCGTGGATGCCGACGGCAACGCGCATGAGCATGTGCTGAGGACGCTCCGCCA 15298 Query 149680 CTTTG 149684 ||||| Sbjct 15299 CTTTG 15303 Score = 104 bits (114), Expect = 2e-17 Identities = 223/326 (68%), Gaps = 17/326 (5%) Strand=Plus/Plus Query 120371 TCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT-CATAAACTCGAACGGGTTG 120429 |||| || ||||| || || |||||||||||||| | ||| ||| | ||||||||||| Sbjct 169935 TCTCGAAGAAGTTCGTCTTTCCCTCCATCGAAAT-TAGTTCCATCCAATCGAACGGGTTC 169993 Query 120430 CTCGCGT--TAAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACT 120487 || || ||||| | ||| | || | | ||||| || |||||||| ||| ||| Sbjct 169994 TCCGTGTGGTAAAGCTTATCG--TTCCCGAGCGCGACGAGTAGCCGGTCCGCAACACACT 170051 Query 120488 CAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACG 120547 | ||||||| |||||| || | |||||| || | ||| || || |||| ||| | Sbjct 170052 CGATGTACTGGCACATCAACGATGAGTTCATACCGATCAAGGCGACAGGCAGCGCGTCGG 170111 Query 120548 TGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACAT---GGCGA-GCATAGTGTGG 120603 | || |||||||| || || || ||||| || || || ||||| || | | | Sbjct 170112 TCAAGAACTCCTTTTCGATCTCGACCGCTTCGGCGATGATGCGGGCGACGCGATGAGGAG 170171 Query 120604 CCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGG 120663 | || | | | |||| | | | || ||||| ||||| || ||||| || Sbjct 170172 CGGGAC----GGCGCTCGAGGTGAG---AAAAGAGGAGGCAGGCAAAATCGGTGTGAAGA 170224 Query 120664 CCCTCGTCGCGCGATATCAGCTCGTT 120689 || ||||||||||| || |||||||| Sbjct 170225 CCTTCGTCGCGCGAGATGAGCTCGTT 170250 >seq1 Length=1017535 Score = 161 bits (178), Expect = 1e-34 Identities = 232/322 (72%), Gaps = 9/322 (3%) Strand=Plus/Plus Query 120371 TCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCATAAACTCGAACGGGTTGC 120430 |||| || ||||| || |||||||||||||| || ||| |||||| ||||||||||| Sbjct 200778 TCTCGAAGAAGTTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTAG 200837 Query 120431 TCGCGTT--AAAGTATTTCGGCTGGCCCAACTGTACGAGCAGTCGGTCCGCTACAAACTC 120488 |||| || ||| ||||| | ||| | | ||||||| ||||| || |||||||| Sbjct 200838 TCGCCTTGTAAATCTTTTCG--TTGCCGAGCGCGACGAGCAACCGGTCGGCGACAAACTC 200895 Query 120489 AATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGT 120548 ||||||| ||||||| | || ||||||||| | || | ||||||||||| ||| Sbjct 200896 GATGTACTGGCACATGAGGTCCGAGTTCATGCCGATCAGCTTGACCGGCAACGCGTCCGT 200955 Query 120549 GAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATG-GCGAGCATAGTGTGGCCGG 120607 | ||||| | ||| || | |||||||| || ||| || | | |||| | | Sbjct 200956 CAGGAACTCTTGCTCGATCGCGACCGCCTCGCGGATGATGCGCTCG-ACCGTGTCGGGGT 201014 Query 120608 GCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCT 120667 || | |||||| | ||| | || |||||| |||||||| ||||| || |||| Sbjct 201015 GCGGTCGGCGTTCGAGGTGCG---AGAAGAGCAGGCAGGCAAAGTCGGTGTGGAGACCCT 201071 Query 120668 CGTCGCGCGATATCAGCTCGTT 120689 |||||||||| || |||||||| Sbjct 201072 CGTCGCGCGAGATGAGCTCGTT 201093 >seq30 Length=195187 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || |||||||| | ||| |||||||||||||||||| Sbjct 195006 GGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 194947 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 194946 GGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 194887 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||||| | ||| || |||| |||| || ||||| ||||| || Sbjct 194886 GACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAGGGT 194827 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 194826 CTTGACAAAGATTTGCAT 194809 Score = 107 bits (118), Expect = 2e-18 Identities = 115/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 133510 CGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGG 133569 ||||||||||||| || | || | |||||||||||||| |||||||| |||||||| Sbjct 195187 CGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCT 195128 Query 133570 TGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTT 133629 |||||| ||||| | || | |||||| | || ||| || |||| |||| || | Sbjct 195127 GGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCT 195068 Query 133630 TGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| || || || || ||||| ||||||||| Sbjct 195067 TGCCCGTGAGGGTCTTGACGAAGATCTGCATG 195036 >seq45 Length=127924 Score = 125 bits (138), Expect = 7e-24 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 || || | ||| ||||| ||||| || |||||||| | ||| |||||||||| Sbjct 327 AAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGC 268 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || | |||||||||||||| |||||||| |||||||| |||| Sbjct 267 TGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATC 208 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | || | |||||| | || ||| || |||| |||| || ||||| Sbjct 207 TTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCC 148 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || ||||| ||||||||| Sbjct 147 GTGAGGGTCTTGACGAAGATCTGCATG 121 >seq13 Length=349228 Score = 113 bits (124), Expect = 4e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 151886 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 151827 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 151826 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 151767 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 || | || | |||||||| | ||| || |||| ||||| || ||||| || || Sbjct 151766 GACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAG 151710 >seq17 Length=321613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 237400 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCC 237341 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 237340 GGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 237281 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||| | | ||| || || | ||||| Sbjct 237280 GACGTTGTCGATCGTGTCCGACGACTCGACCTCAAGGGTGA 237240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419857329440