Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq10 87.8 2e-12 >seq10 Length=415605 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/212 (71%), Gaps = 8/212 (4%) Strand=Plus/Minus Query 47046 GAGGCGGT-GAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGG 47104 || ||||| ||| |||||||||||||| || || | |||||||| ||||||||| | || Sbjct 170142 GAAGCGGTCGAG-ATCGAAAAGGAGTTCTTGACCGACGCGCTGCCTGTCGCCTTGATCGG 170084 Query 47105 CATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCA 47164 |||||| || || |||||| | || || |||| ||| ||||| || || | || Sbjct 170083 TATGAACTCATCGTTGATGTGCCAGTACATCGAGTGTGTTGCGGACCGGCTACTCGTCGC 170024 Query 47165 GCTCGGACAACCGAAATATTTTAATGCTCG--TAATCCGTTTGAGTTTAT-GAACAACAT 47221 |||||| | ||| | |||| | || || ||||| || | || |||| | || Sbjct 170023 GCTCGG--GAACGATAAGCTTTACCACACGGAGAACCCGTTCGATTGGATGGAACTA-AT 169967 Query 47222 TTCGCTCGAGGGCAAAACCAATTTTTTCGAGA 47253 |||| | ||||| || || || || ||||||| Sbjct 169966 TTCGATGGAGGGAAAGACGAACTTCTTCGAGA 169935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610270608160