Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq10 197 2e-44 seq1 161 1e-33 seq6 116 5e-20 seq29 107 3e-17 >seq10 Length=415605 Score = 197 bits (218), Expect = 2e-44 Identities = 218/288 (76%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 |||||| ||| | ||||| ||| ||| |||||||||| || || ||||| || || | Sbjct 15209 ATGTCGGAGCGCTACTTCAC-TCACGCGTCGCCCACGCTGTTCAACGCCGGTACCCCTCA 15151 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 |||||| ||||| ||||| || | |||| ||| ||| |||||||| |||||||| Sbjct 15150 CCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGCAGGACGACTCGATCGAAGGCATCTA 15091 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 |||||||||||| |||||||||||||||||| | || ||||| |||||| || | Sbjct 15090 CGACACGCTCAAGACTTGCGCGCTCATCTCCAAGACTGCGGGCGGGATCGGTCTTTCGAT 15031 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | ||||| | || | ||| | || ||||| |||||| | || || ||| | Sbjct 15030 TCACAACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAACGGCTACTCGAATGGCAT 14971 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||| ||||| ||||| || ||| |||||||||| ||||| ||||| Sbjct 14970 CGTGCCTATGCTCCGCGTCTTCAACAACACGGCGCGTTACGTGGACCA 14923 Score = 136 bits (150), Expect = 6e-26 Identities = 164/219 (75%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 ||||||| ||| || ||||||||||| || ||||| | | ||| ||||||| || || Sbjct 170151 ATCATCGCCGAAGCGGTCGAGATCGAAAAGGAGTTCTTGACCGACGCGCTGCCTGTCGCC 170092 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 | ||||| |||||| || || | |||||||||||||| | | | ||| || ||||| | Sbjct 170091 TTGATCGGTATGAAC-TCATCGTTGATGTGCCAGTACATCG-AGTGTGTTGCGGACCGGC 170034 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 | |||| |||||||| | || |||| |||| |||| ||||||||| |||||| Sbjct 170033 TACTCGTCGCGCTCGGGAAC-GATAAGCTTTACCACACGGAGAACCCGTTCGATTGGATG 169975 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 || | || ||| | ||||| ||||| ||||| |||||| Sbjct 169974 GAACTAATTTCGATGGAGGGAAAGACGAACTTCTTCGAG 169936 Score = 113 bits (124), Expect = 6e-19 Identities = 168/236 (71%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||| |||||| ||||| || || |||||| || ||||||||||||||| || Sbjct 14921 GGAGGCAACAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCGTGGCACGCCGACATC 14862 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 || ||| || |||||| |||||||||||||| || |||| ||||||| Sbjct 14861 TTCGACTTCCTCGACCTCCGCAAGAACCACGGCAA------GGAAGAAGTCCGCGCGCGA 14808 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATGCGCCGCATGGTGACCGGCCG- 261966 || ||||| | || ||||||| ||||||||| ||| ||| | | | | | || Sbjct 14807 GACCTCTTCTTCGCGCTGTGGATCCCCGACCTGTTCATGGAACGCGTCGAG-CAGAACGC 14749 Query 261967 CGACTGGTCGCTCTTTTGCCCGTCCGAGGCGCCCGGCCTGCACGAATGCTATGGCG 262022 ||| ||| |||| || ||||| | |||||||||||||| ||||| ||| |||| Sbjct 14748 CGAGTGGCCGCTGTTCTGCCCCGCTGAGGCGCCCGGCCTCCACGACGTCTACGGCG 14693 Score = 86.0 bits (94), Expect = 9e-11 Identities = 115/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 1455850 TCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 || |||||| | | ||| |||| | || | || || ||||||||||| |||||||||| Sbjct 170889 TCGACTGGGAGCGGTTGAACGACAAGGAACAGCACTTTATCAAGCACGTTCTCGCCTTTT 170830 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 | ||||||| || |||||||| ||||||||| | || || || | ||||| Sbjct 170829 T-CGCCGCCTCGGACGGCATCGTCAACGAGAACCTCGTCGAGCGGTTCTCGTCCGAGGTT 170771 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 || | ||||||| || | || ||||| ||||||||| Sbjct 170770 CAGGTCGCAGAGGCTCGCTGCTTCTACGGCTTCCAGATC 170732 >seq1 Length=1017535 Score = 161 bits (178), Expect = 1e-33 Identities = 211/286 (74%), Gaps = 11/286 (4%) Strand=Plus/Minus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGAC----CGACGTGCC 1456515 ||||||||||| ||||||| | || |||| ||| |||| | | |||| | Sbjct 201057 GACTTTGCCTGCCTGCTCTTCTCGCACCTCG--AAC--GCCGACCGCACCCCGACACGGT 201002 Query 1456516 CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCC 1456575 | ||| |||||| |||||| |||| ||||||| ||||||| | | || || |||| Sbjct 201001 CGAGCGCATCATCCGCGAGGCGGTCGCGATCGAGCAAGAGTTCCTGACGGACGCGTTGCC 200942 Query 1456576 GGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCC 1456635 ||| ||| |||||||||||| | | ||||||||||||||||| | | ||||||||| Sbjct 200941 GGTCAAGCTGATCGGCATGAACTCGGAC-CTCATGTGCCAGTACATCG-AGTTTGTCGCC 200884 Query 1456636 GACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCC 1456695 ||||| |||||| ||||||||| | || ||| ||| | || | ||||||||| Sbjct 200883 GACCGGTTGCTCGTCGCGCTCGGCAAC-GAAAAGATTTACAAGGCGACTAACCCGTTCGA 200825 Query 1456696 ATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 | ||||| |||||||| | ||||||||||||||||| |||||| Sbjct 200824 CTTTATGGACATGATCTCGATGGAGGGCAAGACCAACTTCTTCGAG 200779 Score = 105 bits (116), Expect = 1e-16 Identities = 119/156 (76%), Gaps = 5/156 (3%) Strand=Plus/Minus Query 1456122 GAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGA 1456180 ||| || ||||||||||| ||| ||||||| ||| | || || ||||| || Sbjct 201341 GAAGAAAGCCGACTGGGCTATGCGGTGGATCTC---GGACGACCGGTCCATCTTTGGTGA 201285 Query 1456181 GCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCAT 1456239 || || |||| || ||||| |||||||||||||| ||||||||| ||| |||| Sbjct 201284 ACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCTCGTTCGCTTCCAT 201225 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 ||| ||||||||||||||||| |||||||| ||||| Sbjct 201224 CTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCT 201189 Score = 87.8 bits (96), Expect = 3e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 332926 GTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGC 332985 |||||| || || || ||||| ||||| || | | | |||||| || |||||||| Sbjct 837104 GTTGCACGCGAGTGCGAACCGGGTCGTGTTCGAGTACAGTTCCATCGTGCGGCGGAGGGC 837163 Query 332986 CTGTTGGGCCGCCGG-CGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCC 333044 ||| || | |||||| ||| | ||||||| ||||||||||||| || |||||| |||| Sbjct 837164 CTGCTGCG-CGCCGGTCGTCATCGAGTCGGCTTCGTCGAGGATGACGAGCTTGTGCCGCC 837222 Query 333045 CGTGCGGCAG 333054 || |||| || Sbjct 837223 CGAGCGGGAG 837232 >seq6 Length=667699 Score = 116 bits (128), Expect = 5e-20 Identities = 195/281 (69%), Gaps = 1/281 (0%) Strand=Plus/Minus Query 1817497 CCGATGATGGGCTTGTTGGCCTGCGGCGACACGGTCTTGAGGGCCACGTTCATGGTGTGC 1817556 || |||| ||||||||||||||||||||| | | | ||| | | ||| ||| Sbjct 470333 CCCATGACGGGCTTGTTGGCCTGCGGCGAGATGATGTTGCGCGGGACGGCGCAAATGTTG 470274 Query 1817557 GTCACCTCGGCGCGCGCGTCT-CAGACTGGGGCACATGGAGGTTCATCTCGTCGCCGTCA 1817615 ||| |||||| || | ||| | ||||| ||||| || | |||||||||||||||||| Sbjct 470273 ATCAACTCGGCTCGGGTCTCTTCCGACTGCGGCACGTGCAAGTTCATCTCGTCGCCGTCG 470214 Query 1817616 AAGTCGGCATTGTAGGTGCCCGTGACGGCCAGGTTGAACCGCATGGTACGGCCGGGCATG 1817675 || ||||| ||||| | |||||| | || ||||| ||| | ||| | |||||| Sbjct 470213 AAATCGGCGTTGTACGGCGACGTGACCGACAAGTTGAGCCGGAAGGTCGAGTACGGCATG 470154 Query 1817676 GGCACCACCTTGTGCATGAGCATGGAGCCCATGTGGAGTGAGGGCTGCCGGTTCATCACC 1817735 || || |||| | ||| || | |||| || || || |||||||| | || Sbjct 470153 AGCTTGACGCGGTGCGCCATCATCGACATCTTGTGCAGCGACGGTTGCCGGTTGAACAAG 470094 Query 1817736 ACGGCGTCGCCGGCGCGCAGGTGACGCTCGACTGTCCACCC 1817776 || ||||||| | ||||| |||||||| ||||||| Sbjct 470093 ACAATGTCGCCGTCCTTGAGGTGGCGCTCGACGATCCACCC 470053 Score = 105 bits (116), Expect = 1e-16 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 1818078 GGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCG 1818137 ||||| |||||||| || |||| | ||| | ||||| | || ||||| || ||| Sbjct 469916 GGCGTGACGCGCTCCGGGTAGGTCAAAGTCCTCGCGATCGAGAACGGGACGCCGACTTCG 469857 Query 1818138 TCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTG 1818197 || | | | | ||||||| | ||||||||| ||||||| ||||| |||||||||| Sbjct 469856 TCGAGCGCCAAGTTGGGGTCGCCGGTGATGACGGTTCGCGCGGAAAAGTCGACGCGCTTG 469797 Query 1818198 CCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCC 1818245 ||||| | |||||||| | || || || |||||||||| |||| || Sbjct 469796 CCCATCAAGTTGCCGCGCAACCGCCCTTCTTTGCCCTTGAGCCGCGCC 469749 >seq29 Length=197879 Score = 107 bits (118), Expect = 3e-17 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 ||||||||||||||| ||||||| |||| ||||||| ||||||||||| || ||||| Sbjct 181671 CTGCTTGCCCATGGCACTCTGGTACGTGTTTCGCGGCGACTGGTTGTGGTCGGGGAACGG 181730 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCGACGTGCGT 1601472 |||||||||||||||| ||| || || | ||||||| |||| |||||| Sbjct 181731 GATGATGGACGCGCAGATGCCGAGGATCATGGCGGGGTGGATCTCGCAGTGCGT 181784 Score = 102 bits (112), Expect = 1e-15 Identities = 324/494 (66%), Gaps = 19/494 (4%) Strand=Plus/Plus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 |||||||||||| | || || || || | ||| || ||||||||||||||| | || Sbjct 180597 CTCCATCTCTCCGAATCGCAAACCTCCGTCCCTCGACCGACCCTCGACCGGCTGCCTCGT 180656 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCAG 1600377 | |||||||| || || |||| |||||||| ||||||||| | ||| ||| ||| Sbjct 180657 CAAGATCTGGACCGGTCCTCGTGCACGGGCGTGGATCTTGTCGCCGACCATGTGCTTCAG 180716 Query 1600378 GGCCTGGTAGTAGACCGG--CGCCGTAAAGATCAACGCCTCCATGGGCTCG---CCGGTG 1600432 ||||||||| ||| || || ||| | ||| | | ||| | |||||| Sbjct 180717 TCGCTGGTAGTACGTCGGACCGAGGT--AGACCTGCGCTTGAA---GCTTGCGACCGGTG 180771 Query 1600433 TGCGGGTGGTAGAGCACCTCCTTGCCGTAGCG-CTCGCATCCGTGGCGAGCCAACTCGGC 1600491 || || ||| | ||||| ||| ||| | | | |||| | ||| | | Sbjct 180772 TGGCCGTTGTACATGACCTCGAGACCG-CGCGAGTGGTAGCCGTACTGCCGCAAGAGGTC 180830 Query 1600492 GGCGACATCGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCG 1600551 || || | ||||| ||||| || || ||||| |||| ||| | | || | Sbjct 180831 GGAGATGGCCTCGACCGTGACTTCGGAGAACGGCGTCGCGTCACCCTCGTTACCGGTGAT 180890 Query 1600552 GCAGGCCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGAT 1600611 | || | || ||| || ||| | || | || || ||||||||||||||||| Sbjct 180891 GGTGGAGAGTTTCGACAGCAGACACTCGACCAAGTGACCGATCGTCATGCGCGACGGGAT 180950 Query 1600612 GGCGTGCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTC 1600671 ||||||||||||||| | | |||||||||| || || | ||| | |||||||| Sbjct 180951 GGCGTGCGGGTTGATGATCAAGTCGGGCGTGATGCCCTCG---GCCGAAAACGGCATGTC 181007 Query 1600672 CTCGGTGGAGCGCA--CGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTG 1600729 |||| || | | | | || | || ||||| || ||||| || |||| | ||| Sbjct 181008 CTCG--TGACGGTAGGTGATACCGATCGTTCCCTTCTGACCGTGTCGAGACGCAAACTTG 181065 Query 1600730 TCGCCCACCTCGGG 1600743 ||||| | |||||| Sbjct 181066 TCGCCAATCTCGGG 181079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177796153513272