Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq45 122 8e-23 seq30 120 3e-22 seq13 95.1 1e-14 seq17 86.0 6e-12 >seq45 Length=127924 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 ||||||||| | | | ||||| || | || |||||| || ||||||||||| | Sbjct 349 TCCACCACGAAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 290 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 | ||| || |||| || |||||||| || ||||| ||||| ||||||||||| | || Sbjct 289 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGG 230 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCA 35687 | || |||||||||| |||||| ||| | |||| | | |||||| || || | Sbjct 229 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGA 171 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| | ||||||||| || ||||| | || || || || |||||||| Sbjct 170 CCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 122 >seq30 Length=195187 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | ||| || |||| || |||||||| || || || Sbjct 195000 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 194941 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 194940 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 194882 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||||| ||| || ||||| | ||||||||| || ||||||| || || | Sbjct 194881 TGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAGGGTCTTGA 194822 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 194821 CAAAGATTTGCAT 194809 Score = 93.3 bits (102), Expect = 4e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 |||||||| || ||||| ||||| ||||||||||| | || | || |||||||||| | Sbjct 195185 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 195126 Query 35648 ATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | |||| | | |||||| || || ||||| | ||||||||| || Sbjct 195125 ATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTT 195067 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | || || || || |||||||| Sbjct 195066 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 195037 >seq13 Length=349228 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || |||| || |||||||| || ||||| Sbjct 151880 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 151821 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 151820 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 151762 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | ||||||| ||| || ||||| | |||||||| || ||||| Sbjct 151761 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGT 151713 >seq17 Length=321613 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/163 (73%), Gaps = 3/163 (2%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || |||| || |||||||| || ||||| Sbjct 237394 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 237335 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || |||||||||| |||||| ||| | || Sbjct 237334 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 237276 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATC-GTTT 35705 || | | |||||| ||| || ||||| | |||||| |||| Sbjct 237275 TGTCGATCGTGTCCGACGACTCGACCTCAAGGGTGATCTGTTT 237233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450792720952480