Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq30 116 4e-21 seq13 109 6e-19 seq17 100 3e-16 seq10 98.7 1e-15 >seq30 Length=195187 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | |||||||| || || || ||||| || |||||||| || Sbjct 195035 CCGCCGCGGAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 194976 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| |||||||| ||||| || || || | |||||||| |||||||| Sbjct 194975 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGG 194916 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || ||||| ||| | ||||||||||| || || Sbjct 194915 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 194856 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || || || | || || || || |||||||| Sbjct 194855 TCGAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 194809 >seq13 Length=349228 Score = 109 bits (120), Expect = 6e-19 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| | ||| | ||| ||| Sbjct 151897 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCG 151838 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | ||||||||| ||||| || ||||| || || || || Sbjct 151837 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 151778 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | ||||||||||| || || ||||| || || || || Sbjct 151777 ATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTG 151718 Query 134685 CCGGT 134689 || || Sbjct 151717 CCCGT 151713 >seq17 Length=321613 Score = 100 bits (110), Expect = 3e-16 Identities = 126/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || || || ||||| || ||||||||||| | |||| | ||| ||| Sbjct 237411 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCG 237352 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| ||||| || | ||||||||| ||||| || ||||| || || || || Sbjct 237351 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 237292 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || ||||| ||| | ||||| ||||| || || || || || || Sbjct 237291 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGACGACTCGACCTCAAGGGTGAT 237239 >seq10 Length=415605 Score = 98.7 bits (108), Expect = 1e-15 Identities = 357/553 (65%), Gaps = 7/553 (1%) Strand=Plus/Minus Query 7537 ATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGCATT 7596 ||| ||||| || ||||| || ||| |||||||| ||||||| || || ||||| Sbjct 15311 ATCGACGGCAAAGTGGCGGAGCGTCCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATC 15252 Query 7597 CACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAGTTT 7656 ||||| ||||| | || | ||||| ||| | ||||||| | | || Sbjct 15251 CACGGACCCGACATCAAGCGTGCTATCGAAACCTACAACTTGATGTCGGAGCGCTACTTC 15192 Query 7657 ACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGTCCTCGTGT 7716 || ||||| |||||||| |||| ||| || || || ||| | || || || Sbjct 15191 ACTCACGCGTCGCCCACGCTGTTCAACGCCGGTACCCCTCACCCGCAACTCTCGTCCTGC 15132 Query 7717 TTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA-TTG 7775 || | | ||||||| || ||| ||||| ||||| ||| ||||||| | || ||| Sbjct 15131 TTCCTCGTCACCATGCAGGACGACTCGATCGAAGGCATCTACGACACGCT-CAAGACTTG 15073 Query 7776 CGCCAATATTTCCAAATACGGCGG-CGGAATAGGTCTGAACGTAAACGACGTGCGCGCCA 7834 ||| || ||||| || |||| ||| || ||||| | || || | ||||| | Sbjct 15072 CGCGCTCATCTCCAAG-ACTGCGGGCGGGATCGGTCTTTCGATTCACAACATCCGCGCGA 15014 Query 7835 ACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCG 7894 |||| ||||| ||| ||||| | | | || | | ||| ||| | |||| Sbjct 15013 CCGGTTCGTACATCGCCGGCACGAACGGCTACTCGAATGGCATCGTGCCTATGCTCCGCG 14954 Query 7895 TGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAA---GCGCAAAGGCGCCGCTG 7951 | ||||| ||| ||| ||| | || ||||| || || || ||| ||||| | Sbjct 14953 TCTTCAACAACACGGCGCGTTACGTGGACCAAGGAGGCAACAAGCGACCCGGCGCGTTCG 14894 Query 7952 CCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGCAACA 8011 | ||||| | |||||||||||||| ||||| | || | || | || || ||| Sbjct 14893 CGATCTACCTTGAGCCGTGGCACGCCGACATCTTCGACTTCCTCGACCTCCGCAAGAACC 14834 Query 8012 TGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGATCTGT 8071 || ||||| | ||||| || || ||||||| ||||| | ||||| |||| Sbjct 14833 ACGGCAAGGAAGAAGTCCGCGCGCGAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTGT 14774 Query 8072 TTATGAGGCGCGT 8084 | ||| ||||| Sbjct 14773 TCATGGAACGCGT 14761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505397414473120