Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10 120 4e-22 >seq10 Length=415605 Score = 120 bits (132), Expect = 4e-22 Identities = 521/812 (64%), Gaps = 33/812 (4%) Strand=Plus/Plus Query 111356 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTC 111415 || ||||||||||||||| |||| | |||||||| ||| | | || || || | | Sbjct 14557 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCGACCTGGGCCTCAAGGATGGCGTAC 14616 Query 111416 CA-AACATCGGCG----GCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTG 111470 || ||| || ||| | | |||| || ||||| || |||||| ||||||||| Sbjct 14617 CACAACTTCTGCGCCGAGATTGTAC----GC-TTGGCGCGACCCTCCTTCTCGTACTTCT 14671 Query 111471 TGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGAC 111530 | |||| || ||||| || || ||||| ||| || || |||| | || | Sbjct 14672 CGAAGAGCGCCCTGAACTCGTCGCCGTAGACGTCGTGGAGGCCGGGCGCCTCAGCGGGGC 14731 Query 111531 AGAAAAGAGACCATTGACCACCTTC--CTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 |||| || | ||| | | | ||| ||| || || | |||||| ||||| || ||||| Sbjct 14732 AGAACAGCGGCCACT--CGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCGGGGATCCA 14789 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 ||| | | ||||| |||| || | ||||| | || ||||| || | || Sbjct 14790 CAGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTC 14849 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG 111708 ||||| || | ||| || |||||||| |||||||| |||| |||| | || ||| Sbjct 14850 GAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCG 14909 Query 111709 ---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAAT 111765 || |||| | || || ||||| ||| ||| || ||||| ||||| || | Sbjct 14910 CTTGTTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCAC 14969 Query 111766 AATACCATCTGATTGACCATTTGT-CCCCCGA-ATACGAGATTTATTGGCTCTCACATCA 111823 || |||| || | || || || || ||| ||||| | || || | | | Sbjct 14970 GATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGA-----ACCGG-TCGCGC-GGA 15022 Query 111824 TGGATGTGCATC------CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | |||| ||| || || || || || ||| ||||| |||| || | | Sbjct 15023 T-GTTGTGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTG 15081 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | ||||| || | ||| ||||| |||| ||| || |||||||| || Sbjct 15082 AGCGTGTCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAG 15141 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 | ||||| || ||||| || ||||| || || || | |||||| |||| | Sbjct 15142 AGTTGCGGGTGAGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGC 15201 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 | |||||| || ||| || || | || | ||||| ||||||||||||| Sbjct 15202 TCCGACATCAAGTTGTAGGTTTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACG 15261 Query 112058 GCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA 112117 || || ||||||| ||||| ||| || ||| | |||| |||| ||| | | | Sbjct 15262 GCAACGCGCATGAGCATGTGCTGAGGACGCTCCGCCACTTTGCCGTCGATCCGCAGCAAA 15321 Query 112118 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTA 112149 || ||| || ||||||| ||| ||||| Sbjct 15322 TACGAGCGCTCGAGAGTTTTGAAACCGAAGTA 15353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628030775337600