Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq10 152 6e-32 seq1 87.8 2e-12 >seq10 Length=415605 Score = 152 bits (168), Expect = 6e-32 Identities = 480/731 (66%), Gaps = 17/731 (2%) Strand=Plus/Plus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 || |||||||| |||||| | || | |||||||| |||| || || || || | | Sbjct 14557 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCGACCTGGGCCTCAAGGATGGCGTAC 14616 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 || | | || || || | | || ||||| || ||||| | ||||||||| | | Sbjct 14617 CACAACTTCTGC-GCCGAGATTGTACGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 14675 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 ||| || ||||| || || | | || ||| || || |||| | | |||||||| Sbjct 14676 GAGCGCCCTGAACTCGTCGCCGTAGACGTCGTGGAGGCCGGGCGCCTCAGCGGGGCAGAA 14735 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 || | ||| | | || ||| || || | |||||| ||||| |||||||| ||||| Sbjct 14736 CAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCGGGGATCCACAGCGC 14795 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 ||||||| || || ||| ||||||| | || || || || | || | || Sbjct 14796 GAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 14855 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC------CTTACG 119182 ||| | ||| || ||||||||||| || ||||| | ||||| | || ||| | Sbjct 14856 GTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTT--G 14913 Query 119183 ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 | || | |||| || || | ||| ||| ||| || || || ||||| || | ||| Sbjct 14914 TTG-CCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGAT 14972 Query 119243 ACCATCGGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCGTGG 119300 |||| || | ||| || || || ||| ||||| || | || | || | ||| Sbjct 14973 GCCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGA-AC-CGGTCGCGCGGATGTTGTGA 15030 Query 119301 ATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCG 119360 || | ||| || || || || ||| ||||| ||||||| | |||| || || Sbjct 15031 ATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCG 15090 Query 119361 TAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGC 119420 ||||| || ||||||||||| ||| | | || |||||||||| ||| | ||| || Sbjct 15091 TAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGG 15150 Query 119421 CTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATC 119480 || ||||| |||||||| || || || | |||||| |||| | | |||||| Sbjct 15151 TGAGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGACATC 15210 Query 119481 TTGTCGTAGGTCTCCA-AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539 || |||||| || | || || | ||||| ||||| || |||| | || || Sbjct 15211 AAGTTGTAGGTTTCGATAGCACGCTTG-ATGTCGGGTCCGTGGATGCCGACGGCAACGCG 15269 Query 119540 CATAAACATGT 119550 ||| | ||||| Sbjct 15270 CATGAGCATGT 15280 >seq1 Length=1017535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Plus Query 130060 CGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGA 130119 ||||||| ||||| ||||||||||| |||||||| | |||||| || | | || || Sbjct 201179 CGAGAAGGTGAGACCCGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAAGCGAACGA 201238 Query 130120 GCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAA---GGA 130176 ||| ||||||||||| ||||| || |||||||| | || || ||| |||| ||| Sbjct 201239 GCCCGAGAAGAAGATGCCCTCGACGGCGGCGAACGCGACCAGGCGTTCACCAAAGATGGA 201298 Query 130177 GCGGGACTTTGTATCA-AACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGA 130235 ||| | || | | |||| ||| ||||| | || || |||| ||| || |||| Sbjct 201299 CCGG----TCGTCCGAGATCCACCGCATAGCCCAGTCGGCTTTCTTCTTGATGCAGGGGA 201354 Query 130236 CGGT 130239 | || Sbjct 201355 CTGT 201358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433994051360