Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq10 333 3e-86 seq1 93.3 5e-14 >seq10 Length=415605 Score = 333 bits (368), Expect = 3e-86 Identities = 515/733 (70%), Gaps = 2/733 (0%) Strand=Plus/Plus Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229 ||||||||||||| |||| | || | || ||||| ||||| || || | | ||| Sbjct 14556 GGCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCGACCTGGGCCTCAAGGATGGCGTA 14615 Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289 ||| | | | | ||| || |||| ||||||| ||||| || | | Sbjct 14616 CCACAACTTCTGCGCCGAGATTGTACGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAA 14675 Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349 | | | |||| | || || ||||| ||| | ||||| || ||| ||||| | Sbjct 14676 GAGCGCCCTGAACTCGTCGCCGTAGACGTCGTGGAGGCCGGGCGCCTCAGCGGGGCAGAA 14735 Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 ||| |||| || ||| || ||| || |||||||| ||||| ||||||||||| || Sbjct 14736 CAGCGGCCACTCGGCGTTCTGCTCGACGCGTTCCATGAACAGGTCGGGGATCCACAGCGC 14795 Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 ||||||||| || || | || || | ||| |||||| || || ||||| || Sbjct 14796 GAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 14855 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 ||| | ||||||||||||||||||||| || ||||| ||||||| || |||||| Sbjct 14856 GTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCCGGGTCGCTTGTT 14915 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||| || |||| ||||| || |||||||||||||| || |||||||| ||||||||||| Sbjct 14916 GCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGCACGATGCC 14975 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 | | | ||||||||| ||| ||| | |||| |||| || ||||| | | | | Sbjct 14976 ATTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTT-GTGAATCG 15034 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 | ||||| || || | |||||||||| ||||||| ||||||||| ||||||| Sbjct 15035 AAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTGTCGTAGA 15094 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 |||| |||||||||||||||| ||| | ||| ||||||||| ||| | || |||| Sbjct 15095 TGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGCGGGTGAG 15154 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 |||||||||||||| || || |||| |||||| |||||| | | ||||| | Sbjct 15155 GGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGACATCAAGT 15214 Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 ||| || || | | ||| || |||| |||||||||||||| || |||||||||| Sbjct 15215 TGTAGGTTTCGATAGCACGCTTGATGTCGGGTCCGTGGATGCCGACGGCAACGCGCATGA 15274 Query 79889 AGAGGTACTGGGG 79901 | || ||| || Sbjct 15275 GCATGTGCTGAGG 15287 Score = 302 bits (334), Expect = 5e-77 Identities = 517/742 (70%), Gaps = 6/742 (1%) Strand=Plus/Minus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 |||||| || | ||||||| || || ||||||||||| || |||| || ||| | Sbjct 15287 CCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCACGGACCCGACATCAAGCGTGCT 15228 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 ||| || ||| || ||||| || | |||||| |||||| |||| || || ||| Sbjct 15227 ATCGAAACCTACAACTTGATGTCGGAGCGCTACTTCACTCACGCGTCGCCCACGCTGTTC 15168 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 ||||||||||| ||||||| | ||| ||| ||||| || | ||| |||| ||| Sbjct 15167 AACGCCGGTACCCCTCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGCAGGACGAC 15108 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || || ||||||||||| ||||||||| ||||||| |||||||||| | || Sbjct 15107 TCGATCGAAGGCATCTACGACACGCTCAAGACTTGCGCGCTCATCTCCAAGACTGCGGGC 15048 Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| | | | | | || ||||| ||| ||| | ||| || ||||| Sbjct 15047 GGGATCGGTCTTTCGATTCAC-AACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAA 14989 Query 19402 CGGAGTAGCCGAC-GGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 ||| || ||| || ||||| || |||||||||||||||||||||||||| | |||| Sbjct 14988 CGGC-TACTCGAATGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCGCGTTACG 14930 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 | |||| || ||| ||| || ||| ||||||| |||||||| ||||| ||||||| Sbjct 14929 TGGACCAAGGAGGCAACAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCGTGGCACG 14870 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | ||| || | || |||||||| || ||| |||||| || | || || | ||| | Sbjct 14869 CCGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAAGAAGTCCGCGCGC 14810 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 | ||||||||| || ||||||| || ||||| |||||||| || ||| || ||| Sbjct 14809 GAGACCTCTTCTTCGCGCTGTGGATCCCCGACCTGTTCATGGAACGCGTCGAGCAGAACG 14750 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGC-CCTGGCCTACCCGACGTCTACGGCGAG 19699 || |||| ||| | ||||| | | | || || ||||| | ||||||||||||||| Sbjct 14749 CCGAGTGGCCGCTGTTCTGCCC-CGCTGAGGCGCCCGGCCTCCACGACGTCTACGGCGAC 14691 Query 19700 GCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGG 19759 | ||||| | | | | | || |||| |||| || |||| || | Sbjct 14690 GAGTTCAGGGCGCTCTTCGAGAAGTACGAGAAGGAGGGTCGCGCCAAGCGTACAATCTCG 14631 Query 19760 GCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATG 19819 || | | | | ||| || | |||| | |||||||||||| |||| || | |||| Sbjct 14630 GCGCAGAAGTTGTGGTACGCCATCCTTGAGGCCCAGGTCGAGACGGGCAATCCCTTCATG 14571 Query 19820 TGCTACAAGGACGCCGCGAACG 19841 |||||||||||||||||||| Sbjct 14570 CTCTACAAGGACGCCGCGAACG 14549 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 78204 CATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAG 78263 |||||| |||||||| ||||| ||||| ||||| | |||||| |||| |||| |||| Sbjct 13345 CATGCCGGTCTTGAGTCCCTTTTTCCAGCCGTAGAAGTGCATGCTCGTGAGCTGCGCCAT 13404 Query 78264 ACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTC 78323 |||| | ||||||||||||||| |||||||||||| | || || || || Sbjct 13405 GGTCGGCGAAGAGAGATGGATGTTGAGCGACTGCGACTGGTCGATGAAAGCTCCACGATC 13464 Query 78324 GGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTT 78383 |||||||| ||||||||| ||| |||| ||| ||||||| |||| ||| || ||| Sbjct 13465 GGCCGCCAAGTCGATGACGACCTTCTGCGAAATTTCCCAGACGGTCTTGTAGATCCTCTT 13524 Query 78384 CAGCTCTTCCTGGATGT 78400 ||| || || |||||| Sbjct 13525 CAGTTCGTCGGGGATGT 13541 Score = 125 bits (138), Expect = 8e-24 Identities = 147/197 (75%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 20606 ATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATC 20665 |||||| | | || ||| || |||| |||||| |||||||| | |||||| | || Sbjct 13539 ATCCCCGACGAACTGAAGAGGATCTACAAGACCGTCTGGGAAATTTCGCAGAAGGTCGTC 13480 Query 20666 ATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTC 20725 |||||| ||||||||||||| || || | |||||||||||| ||||||||||| || | Sbjct 13479 ATCGACTTGGCGGCCGATCGTGGAGCTTTCATCGACCAGTCGCAGTCGCTCAACATC--C 13422 Query 20726 ATGGAGAAT--CCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGG 20783 || | |||| | ||||| |||| | |||||| | ||||||||| | |||| Sbjct 13421 ATCTCTCTTCGCCGACCATGGCGCAGCTCACGAGCATGCACTTCTACGGCTGGAAAAAGG 13362 Query 20784 GGCTCAAGACGGGCATG 20800 | |||||||| |||||| Sbjct 13361 GACTCAAGACCGGCATG 13345 Score = 87.8 bits (96), Expect = 2e-12 Identities = 182/267 (68%), Gaps = 18/267 (7%) Strand=Plus/Plus Query 78819 GTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGC 78878 |||||||| || || | | | |||||| | || | ||| ||||||| | ||||| Sbjct 14065 GTTGAGCTGACGGGCTTCCGGCGAGTCGAAGGGCAGACGGAGGGCCATGAAGGCGTCGGC 14124 Query 78879 CAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTC 78938 || || || ||||| | | ||||||| |||||||||||||||| |||| ||||||| Sbjct 14125 GAGACCTTGCACGCCCACACCGATCGGGCGGTGGCGCATGTTGC---TTCGCTCCGCCTC 14181 Query 78939 ---GGTCGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGT 78995 | ||||| |||| ||||||| |||||| ||||| | ||||||| Sbjct 14182 CTTGACGGGGTAGTAGTTGACGTCGATGATGCGGTTGAGGTTGTAGGCGACGACCTTGAC 14241 Query 78996 CACCTCGTACAATTTGGCGAAATC--AAAATGATTTCCTTTGATGAAAGTCGGTAGGCAC 79053 || |||| || || |||||| | | ||| |||||||| | ||| || Sbjct 14242 GACGTCGTGCAGCTTCTGGAAATCGTACTCTCCGTTC--TTGATGAAGGACGGGAG---- 14295 Query 79054 AGCGAT----GCCAGGTTGCACACGGC 79076 |||||| ||||||||||||||||| Sbjct 14296 AGCGATGGAGGCCAGGTTGCACACGGC 14322 >seq1 Length=1017535 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/178 (72%), Gaps = 6/178 (3%) Strand=Plus/Minus Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT----GAGTCCTGGAG 59967 |||||| ||| | || | ||||| || ||||| |||| |||||| || | || Sbjct 201355 GTCCCCTGCA-TCAAGAAGAAAGCCGACTGGGCTATGCGGTGGATCTCGGACGACCGGTC 201297 Query 59968 CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCT 60027 |||| |||| |||| || | || || || ||| || || ||||||||||| |||| Sbjct 201296 CATC-TTTGGTGAACGCCTGGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCGGGCT 201238 Query 60028 CGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 ||||| | | || ||||||||||| ||||| || ||||||||||| || | ||||| Sbjct 201237 CGTTCGCTTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCACCTTCTC 201180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523730376640