Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq10 329 4e-85 seq19 113 5e-20 seq34 105 7e-18 seq8 104 3e-17 >seq10 Length=415605 Score = 329 bits (364), Expect = 4e-85 Identities = 514/730 (70%), Gaps = 4/730 (1%) Strand=Plus/Minus Query 53180 CCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTC 53239 |||||| | | |||||||||| ||| | || |||||||| |||| || ||||| Sbjct 15287 CCTCAGCACATGCTCATGCGCGTTGCCGTCGGCATCCACGGACCCGACATCAAGCGTGCT 15228 Query 53240 CGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTC 53299 || || ||| |||| ||| | ||||| || ||||| |||| || |||||| Sbjct 15227 ATCGAAACCTACAACTTGATGTCGGAGCGCTACTTCACTCACGCGTCGCCCACGCTGTTC 15168 Query 53300 AACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGAC 53359 ||||| ||||| |||||| || | ||| ||||||||| || | ||| |||| ||| Sbjct 15167 AACGCCGGTACCCCTCACCCGCAACTCTCGTCCTGCTTCCTCGTCACCATGCAGGACGAC 15108 Query 53360 TCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGT 53419 |||||||| ||||||||||| ||||||||| || || | |||||||||| |||| Sbjct 15107 TCGATCGAAGGCATCTACGACACGCTCAAGACTTGCGCGCTCATCTCCAAGACTGCGGGC 15048 Query 53420 GGTATCGGTATC-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 || |||||| | | | | | ||| |||| |||| ||| | ||| || ||||| Sbjct 15047 GGGATCGGTCTTTCGATTCAC-AACATCCGCGCGACCGGTTCGTACATCGCCGGCACGAA 14989 Query 53479 CGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGT 53538 |||| | | |||| ||||||||||||||||||||||||||||||||||| || ||||| Sbjct 14988 CGGCTACTCGAATGGCATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCGCGTTACGT 14929 Query 53539 CAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGC 53598 |||| || || ||||| || ||||||| |||||||| |||||||||||||| Sbjct 14928 GGACCAAGGAGGCAACAAGCGACCCGGCGCGTTCGCGATCTACCTTGAGCCGTGGCACGC 14869 Query 53599 CGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCG 53658 |||||| | || || ||||| || || ||| || || | ||||| | ||| || Sbjct 14868 CGACATCTTCGACTTCCTCGACCTCCGCAAGAACCACGGCAAGGAAGAAGTCCGCGCGCG 14809 Query 53659 TGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGA 53718 ||||| || || |||||||| || ||||| |||||| || || ||| || ||| Sbjct 14808 AGACCTCTTCTTCGCGCTGTGGATCCCCGACCTGTTCATGGAACGCGTCGAGCAGAACGC 14749 Query 53719 GGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGA 53778 |||||| ||| | ||||| ||| ||||||||||| | |||||||| || || Sbjct 14748 CGAGTGGCCGCTGTTCTGCCCCGCTGAGGCGCCCGGCCTCCACGACGTCTACGGCGACGA 14689 Query 53779 GTTTAACGAGATGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGG 53837 ||| | | | | | ||| || ||||| |||| ||| |||| | || || Sbjct 14688 GTTCAGGGCGCTCT-TCGAGAAGTACGAGAAGGAGGGTCGCGCCAAGCGTACAATCTCGG 14630 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 ||| || | ||| | || ||||| || |||||| |||||||| | || | |||| Sbjct 14629 CGCAGAAGTTGTGGTACGCCATCCTTGAGGCCCAGGTCGAGACGGGCAATCCCTTCATGC 14570 Query 53898 GCTACAAGGA 53907 ||||||||| Sbjct 14569 TCTACAAGGA 14560 Score = 89.7 bits (98), Expect = 6e-13 Identities = 138/191 (72%), Gaps = 16/191 (8%) Strand=Plus/Minus Query 55727 CTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAG 55785 || ||| ||| ||| ||| || ||||| ||| | |||||| ||| | || ||| || Sbjct 13527 CTGAAGAGGATCTACAAGACCGTCTGGGAAATTTCGCAGAAG-GTCGTCATCGACTTGGC 13469 Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC- 55844 || |||||||| || | |||||||||||| ||||| || |||||| ||| || Sbjct 13468 GGCCGATCGTGGAGCTTTCATCGACCAGTCGCAGTCGCTCAACATC--CAT-----CTCT 13416 Query 55845 CTTCACTGGCCAAGTTG-AGCTC-----GATGCACTTTTACGGGTGGAAGAAGGGACTCA 55898 |||| | | ||| | | ||||| |||||||| ||||| ||||| |||||||||| Sbjct 13415 CTTCGCCGACCATGGCGCAGCTCACGAGCATGCACTTCTACGGCTGGAAAAAGGGACTCA 13356 Query 55899 AGACGGGTATG 55909 |||| || ||| Sbjct 13355 AGACCGGCATG 13345 >seq19 Length=300983 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| | ||| ||||| || ||||| | |||||||| || || || ||| Sbjct 14069 AAACTCGCGGACGGGGTGGGTCTCGCCCGTCGCGAGGACAAAGTCGTCCGGCTCGTCCTG 14128 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || |||||| |||||||| |||||||||| || | ||||| |||||||| |||||||| Sbjct 14129 CTGCAGCATGCGCCACATGCCCTCGACGTAGTCACGGGCGTGGCCCCAGTCACGCTTGGC 14188 Query 159063 ATCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 14189 GTCGAGGTTACCGAG 14203 >seq34 Length=175577 Score = 105 bits (116), Expect = 7e-18 Identities = 143/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCA-GCAAGACGCGTACCGAATTG 117363 ||||| |||||||||| ||| || ||||| || || || |||| ||||| ||||| || Sbjct 107458 GTGAAGATGTAACGAGCGCTCGCGGCATCTTTACCGCCCTGCAAC-CGCGTTCCGAACTG 107400 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| |||| || | || ||||| |||||| | ||| ||||||||||| || | ||| Sbjct 107399 TCCGTTCGGGTCGAGGACGTTCAAGTTGTTCGAGCCGACAAAGTTTTGCGCGAGACCGAC 107340 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 || || ||||| || | || || ||||| || |||| ||||| | | |||||| Sbjct 107339 GATGGTGCCTTGCAGCGAGACGTCGCCGTGGTGGTAGGCCGAGTGCTCAGAAATGTAGCC 107280 Query 117484 CGCCAGCTGAGCCACCT 117500 || ||||| | |||| Sbjct 107279 CGAAAGCTGTCCGACCT 107263 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | ||| || ||||| || || || || ||||||||| |||||| Sbjct 107458 GTGAAGATGTAACGAGCGCTCGCGGCATCTTTACCGCCCTGCAACCGCGTTCCGAACTGT 107399 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || ||||||| ||| | |||||| | ||| || || || || || | | || Sbjct 107398 CCGTTCGGGTCGAGGACGTTCAAGTTGTTCGAGCCGACAAAGTTTTGCGCGAGACCGACG 107339 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || ||||| ||||| | || |||||||| || |||| ||||| | ||||| ||| Sbjct 107338 ATGGTGCCTTGCAGCGAGACGTCGCCGTGGTGGTAGGCCGAGTGCTCAGAAATGTAGCCC 107279 Query 152209 G 152209 | Sbjct 107278 G 107278 Score = 91.5 bits (100), Expect = 2e-13 Identities = 218/323 (67%), Gaps = 14/323 (4%) Strand=Plus/Minus Query 152812 TCGGTCATGATCATCAGACGACCGTAGCGCAG---GTCACGTAGTGACCCGTAGACCTTT 152868 |||| ||||||||||| || ||||| |||| ||| |||| | | ||| ||||| Sbjct 106443 TCGGCCATGATCATCAAACTCCCGTACCGCAACGAGTC-CGTACT--CGTGTACACCTTC 106387 Query 152869 CCATGTTGAAGCCCGAGGATCTTTTTGA--GGTTGGAAAATTCCTCATTATCGGTCACCT 152926 || || || | ||| | ||||| |||| | || || || |||| || || | Sbjct 106386 CCCTGCTGCAACCCCATGATCTGCTTGATCGCCTG--AATCTCGGCATTCTCCAACAACG 106329 Query 152927 GTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACG 152986 || | | || || || || ||| || || || ||||| || ||||||||| | Sbjct 106328 CCTTGCCGCTCGCCTCGCGCACGTTGAGCAATTTCCCGCGGAGCGGGAACACGCCGTAGT 106269 Query 152987 CGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGG 153046 || |||||| || ||| || |||| | || || || || ||||||||||| || | Sbjct 106268 TGTCGCGGCCGACGACGGCGAGTCCGGAGACGGCGAGCGCCTTGGCCGAGTCACCTTCAG 106209 Query 153047 TGATAATAAGCGTACAGTCGTGAGACCGAT--GAGTACCGGCCCAGTTGGCGTCGTCAAG 153104 ||| ||| || || || | || ||||| | | || ||||| ||||||||| || || Sbjct 106208 TGAGAATGAGGGTGCA--CTTGTGACCGTTGCGGGTGCCGGCGTTGTTGGCGTCTTCGAG 106151 Query 153105 CTTGGGGATTCCCGTGATCCTGC 153127 |||| || || ||||| |||| Sbjct 106150 CTTGACGAGACCGGTGATGCTGC 106128 >seq8 Length=472973 Score = 104 bits (114), Expect = 3e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 124488 TCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTCGGGAATC 124547 |||| |||||| |||| | ||| ||||| || || | | |||||||| || || || Sbjct 159630 TCGACAAACTCGCGGACGGGGTGAGTCTCGCCGGTCGCGAGGACGAAATCGTCCGGC-TC 159688 Query 124548 GACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCAGTCGCG 124606 | || |||||||||| |||||||| ||| |||||| || ||||| |||||||| || Sbjct 159689 GTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAATCGCGGGCGTGGCCCCAGTCACG 159748 Query 124607 CTTGGCATCCAGGTTTCCGAG 124627 |||||| || ||||||||||| Sbjct 159749 CTTGGCGTCGAGGTTTCCGAG 159769 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTG 159002 ||||||||||| | ||| ||||| || ||||| | || || || || || || || Sbjct 159635 AAACTCGCGGACGGGGTGAGTCTCGCCGGTCGCGAGGACGAAATCGTCCGGCTCGTCTTG 159694 Query 159003 TTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || | |||| |||||||| | ||||||||||| | ||||| |||||||| |||||||| Sbjct 159695 CTGCAACATGCGCCACATGCCTTCGACGTAATCGCGGGCGTGGCCCCAGTCACGCTTGGC 159754 Query 159063 ATCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 159755 GTCGAGGTTTCCGAG 159769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214932928800