Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq30 158 1e-33 seq45 145 9e-30 seq10 140 4e-28 seq34 134 2e-26 seq13 123 3e-23 seq17 111 2e-19 >seq30 Length=195187 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || |||||||| || || || ||||| ||||| Sbjct 194809 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCC 194868 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 194869 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 194928 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| |||||||| | || ||||| | || || || Sbjct 194929 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 194988 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| || ||| | ||||| ||||| || Sbjct 194989 ATCCAGAAGGAGTCGACCCTTCACCTCGTCCTCCGTCTCCGCGGCGG 195035 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| Sbjct 195037 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 195096 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 195097 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 195156 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCG 27556 ||||| | || ||||| || ||||| |||| Sbjct 195157 CAGCGCTTGATCTTTGCCGGCAAGCAGCTCG 195187 >seq45 Length=127924 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||| ||||| Sbjct 122 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTCCTCG 181 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||||| || || |||||||||||||| || || || |||||| Sbjct 182 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 241 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || ||||| || ||||| |||||||| | || ||||| | || || || Sbjct 242 CAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 301 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || || | ||| | || ||||| |||||||| Sbjct 302 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTTCGTGGTGGACA 351 >seq10 Length=415605 Score = 140 bits (154), Expect = 4e-28 Identities = 481/742 (65%), Gaps = 25/742 (3%) Strand=Plus/Plus Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081 |||||||||||| |||| | || | || ||||||||||| | || |||||||||| | Sbjct 14557 GCGTCCTTGTAGAGCATGAAGGGATTGCCCGTCTCGACCTGGGCCTCAAGGATGGCGTAC 14616 Query 81082 CAAATCTCGCGCGCC----TTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137 || | || ||||| ||| | | | ||| | ||||| | ||||| | Sbjct 14617 CACAACTTCTGCGCCGAGATTGTACGCTTGGCGCGACCCTCCTTCT----CGTACTTCTC 14672 Query 81138 GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGC 81196 | | ||| | | ||||| | | |||| | || |||| | || ||| |||| Sbjct 14673 GAAGAGCGCCCT-GAACTCGTCGCCGTAGACGTCGTGGAGGCCGGGCGCCTCAGCGGGGC 14731 Query 81197 ACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTC-ATGAAAGCGTCAGGGATCCAG 81255 | | ||| |||| |||| || | ||| || || ||| ||||| ||| |||||||| Sbjct 14732 AGAACAGCGGCCACTCGGCGTTCTGCTCGAC-GCGTTCCATGAACAGGTCGGGGATCCAC 14790 Query 81256 AGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCG 81315 || ||| ||| ||||| || ||| | || || | || ||||| ||| | ||| Sbjct 14791 AGCGCGAAGAAGAGGTCTCGCGCGCGGACTTCTTCCTTGCCGTGGTTCTTGCGGAGGTCG 14850 Query 81316 AGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGA 81375 || ||||| | |||||| || ||||| ||||| || || | |||| || || | | Sbjct 14851 AGGAAGTCGAAGATGTCGGCGTGCCACGGCTCAAGGTAGATCGCGAACGCGCC---GGGT 14907 Query 81376 CG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGG 81429 || ||| || |||| |||||||| || || ||| || || || | |||||| Sbjct 14908 CGCTTGTTGCCTCCTTGGTCCACGTAACGCGCCGTGTTGTTGAAGACGCGGAGCATAGGC 14967 Query 81430 ATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTG 81489 | ||| |||| || | |||||||| || |||| ||| || | ||||| | ||| Sbjct 14968 ACGATGCCATTCGAGTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTG 15027 Query 81490 CTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTC 81549 || ||||||||||| || || | ||| || || | || || || | || Sbjct 15028 TGAATCGAAAGACCGATCCCGCCCGCAGTCTTGGAGATGAGCGCGCAAGTCTTGAGCGTG 15087 Query 81550 TCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGA 81609 || || || || ||||| || | | |||| | | ||| ||| || | || Sbjct 15088 TCGTAGATGCCTTCGATCGAGTCGTCCTGCATGGTGACGAGGAAGCAGGACGAGAGTTGC 15147 Query 81610 GGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGAC 81669 ||| | ||||| |||||||| || || | ||||||| |||| || || | ||| Sbjct 15148 GGGTGAGGGGTACCGGCGTTGAACAGCGTGGGCGACGCGTGAGTGAAGTAGCGCTCCGAC 15207 Query 81670 ATCAGGTCATAGGTTTCCTT--GACGCGTGGAATATCGTCACCGTGAATACCGATAGCTA 81727 |||| || |||||||| | |||| || || ||| ||||| || |||| || | Sbjct 15208 ATCAAGTTGTAGGTTTCGATAGCACGCTTG--ATGTCGGGTCCGTGGATGCCGACGGCAA 15265 Query 81728 CACGCATAAACATGTACTGGGG 81749 | ||||| | ||||| ||| || Sbjct 15266 CGCGCATGAGCATGTGCTGAGG 15287 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 80052 CATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAG 80111 |||||| |||||||| ||||| ||||||||||| | |||||| |||||| ||| | Sbjct 13345 CATGCCGGTCTTGAGTCCCTTTTTCCAGCCGTAGAAGTGCATGCTCGTGAGCTGCGCCAT 13404 Query 80112 TGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATC 80171 || || | |||||| || ||||| ||||| ||||||||| |||||||| Sbjct 13405 GGTCGGCGAAGAGAGATGGATGTTGAGCGACTGCGACTGGTCGATGAAAGCTCCACGATC 13464 Query 80172 TGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 ||||||| || || | ||| || | ||||||||| || || Sbjct 13465 GGCCGCCAAGTCGATGACGACCTTCTGCGAAATTTCCCAGACGGT 13509 >seq34 Length=175577 Score = 134 bits (148), Expect = 2e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113 |||| | ||||| ||||||||| | | ||||| ||||||| ||||||||||| | | Sbjct 107263 AGGTCGGACAGCTTTCGGGCTACATTTCTGAGCACTCGGCCTACCACCACGGCGACGTCT 107322 Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173 |||| || |||||||| ||| || || || ||||||||||| | || ||| ||||| Sbjct 107323 CGCTGCAAGGCACCATCGTCGGTCTCGCGCAAAACTTTGTCGGCTCGAACAACTTGAACG 107382 Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233 | ||||| || |||||||| || || ||| | || || || ||||| |||||| Sbjct 107383 TCCTCGACCCGAACGGACAGTTCGGAACGCGGTTGCAGGGCGGTAAAGATGCCGCGAGCG 107442 Query 32234 CCCGTTACATCTTCACC 32250 | ||||||||||||||| Sbjct 107443 CTCGTTACATCTTCACC 107459 >seq13 Length=349228 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || || |||||||| || || || ||||| ||||| || | || | || | ||| Sbjct 151710 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAG 151769 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||||||||| || || || |||||||||||||| || ||||| || Sbjct 151770 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGC 151829 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | || || || | ||||| || |||| ||||| || || || Sbjct 151830 AAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 151889 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || ||| | || | |||||||| Sbjct 151890 CACCTCGTCCTCCGCTTGCGCGGTGG 151915 >seq17 Length=321613 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501 || || |||||||| ||||| || | || | || | ||||| || || |||||| Sbjct 237239 ATCACCCTTGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 237298 Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 |||||||| || || || |||||||||||||| || ||||| || ||||| |||||||| Sbjct 237299 AAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 237358 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTC 27615 | || ||||| | ||||| || |||| ||||| || || || || || ||| Sbjct 237359 GGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACCTCGTC 237412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309287894720