Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq30 122 8e-23 seq45 114 1e-20 seq13 98.7 9e-16 seq17 86.0 5e-12 >seq30 Length=195187 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| |||||| | || || || || || || ||||| Sbjct 194809 ATGCAAATCTTTGTCAAGACCCTGACGGGCAAGACGATCACGCTCGAGGTCGAGTCGTCC 194868 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| || || || ||||| || ||||| || ||||| || Sbjct 194869 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGACCAG 194928 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||||||| || | || ||| | ||| | || ||||||||| Sbjct 194929 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTACAAC 194988 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || | || | ||| | || || ||||| Sbjct 194989 ATCCAGAAGGAGTCGACCCTTCACCTCGTCCTCCGTCTCCGCGGCGGCAT 195038 >seq45 Length=127924 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || || || || || || | Sbjct 118 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGAGGTCGAGTC 177 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| |||| || | ||||| || || || ||||| || ||||| || ||||| Sbjct 178 CTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCCGA 237 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| || || | |||||||| || | || ||| | ||| | || ||||| Sbjct 238 CCAGCAGCGCTTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTCTCGGATTA 297 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| || |||||||||||| | || ||||| | || | || ||||| Sbjct 298 CAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTCCGCCTTCGTGGTGG 348 >seq13 Length=349228 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || || |||||| | || || || || || || |||||||| |||| || | ||||| Sbjct 151710 CTCACGGGCAAGACGATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAG 151769 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| || ||||| || ||||| || |||||| | || | |||||| Sbjct 151770 GCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGC 151829 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || || | || ||| | || | || || |||||||| || |||||||||||| | Sbjct 151830 AAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTC 151889 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | || | || ||||| ||||| || Sbjct 151890 CACCTCGTCCTCCGCTTGCGCGGTGGTAT 151918 >seq17 Length=321613 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || || ||||| || || |||| ||| |||| || | ||||| || || || ||| Sbjct 237239 ATCACCCTTGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 237298 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || || ||||| || ||||| || |||||| | || | |||||||| || | || ||| Sbjct 237299 AAGGAGGGCATCCCCCCCGACCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 237358 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 | ||| | || || |||||||| || |||||||||||| Sbjct 237359 GGCCGCACCCTCTCGGACTACAACATCCAGAAGGAGTCGACC 237400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434917551909120