Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq30 107 2e-18 seq45 87.8 2e-12 seq13 82.4 7e-11 >seq30 Length=195187 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || ||||| | || || || |||| || ||||| ||||| || || Sbjct 195000 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 194941 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||||| || | || ||| |||||| ||| || |||| ||| Sbjct 194940 GATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 194882 Query 39213 CGCC-ACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | ||| ||| |||||| || || | |||||| | || |||||||| || || | Sbjct 194881 TGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAGGGTCTTGA 194822 Query 39272 CAAAGATTTGCAT 39284 ||||||||||||| Sbjct 194821 CAAAGATTTGCAT 194809 >seq45 Length=127924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| || || || || ||||| | || || || |||| || Sbjct 330 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCG 271 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || | ||||||||||||| || | || ||| |||||| | Sbjct 270 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 211 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | ||| || ||||| || || | |||||| | || Sbjct 210 ATCTTGGCCTTGA-CGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTT 152 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || || ||||| ||||| Sbjct 151 GCCCGTGAGGGTCTTGACGAAGATCTGCAT 122 >seq13 Length=349228 Score = 82.4 bits (90), Expect = 7e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | || || || |||| || ||||| ||||| ||||| Sbjct 151880 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 151821 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || |||||||||||||||| ||| | || ||| |||||| ||| || |||| ||| Sbjct 151820 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 151762 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAG 39263 | | | ||| ||| |||||| || || | ||||| | || ||||| || Sbjct 151761 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAG 151710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544783326428