Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq30 134 3e-26 seq45 131 4e-25 seq13 118 3e-21 >seq30 Length=195187 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || || || |||| |||||||| | | || | || || Sbjct 195020 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCC 194961 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||||||||| || || |||||||| Sbjct 194960 TCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC 194901 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || || || | |||||||||| Sbjct 194900 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTC 194841 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||| || || | || | |||||| Sbjct 194840 TTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 194809 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 |||||||| || || ||||| | || || ||||||||||| || || |||||||| ||| Sbjct 195185 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 195126 Query 225625 ATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTG 225684 ||||| ||| || ||||| ||||| |||| || || || | ||||||||||||| Sbjct 195125 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTG 195066 Query 225685 CCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| | || || | ||| | ||||| Sbjct 195065 CCCGTGAGGGTCTTGACGAAGATCTGCAT 195037 >seq45 Length=127924 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| | |||||| || || || || |||| |||||||| | | || Sbjct 343 ACGAAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAGAGGGT 284 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| | || || ||||||||||| || || Sbjct 283 GCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCC 224 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| || ||||| ||||| |||| || || || | Sbjct 223 CTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAG 164 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||||||| | || || | ||| | ||||| Sbjct 163 CGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 122 >seq13 Length=349228 Score = 118 bits (130), Expect = 3e-21 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||| || || || || |||| ||||| || | | ||| | || || Sbjct 151900 AGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCC 151841 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || || || |||||||| || || || |||||||| Sbjct 151840 TCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 151781 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| ||||| || | || || || | ||||||||| Sbjct 151780 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTC 151721 Query 225682 TTGCCCGT 225689 |||||||| Sbjct 151720 TTGCCCGT 151713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192528816428264