Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq45 185 2e-41 seq13 152 1e-31 seq30 150 4e-31 seq17 129 1e-24 >seq45 Length=127924 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| ||||| || |||| || | || || || ||||||||||| || | Sbjct 348 CCACCACGAAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCCGAG 289 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || |||||||||||||| || || ||||| ||| Sbjct 288 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGG 229 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| |||||||| | ||||| Sbjct 228 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACC 169 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| ||||| | ||||| ||||| |||||||| Sbjct 168 TCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 122 >seq13 Length=349228 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| |||| ||| || || || || | || || || |||||||||||||| | Sbjct 151916 ACCACCGCGCAAGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 151857 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || ||||||||||| | ||| || ||||| || Sbjct 151856 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGGTCGGGGGG 151797 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||| ||||| || | ||||| Sbjct 151796 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGAC 151737 Query 283052 TTCGAGAGTGATCGTCTTACCCGT 283075 ||||| ||||||||||| ||||| Sbjct 151736 CTCGAGGGTGATCGTCTTGCCCGT 151713 >seq30 Length=195187 Score = 150 bits (166), Expect = 4e-31 Identities = 148/191 (77%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || ||||||||||| || | || |||||||| ||||| || || || ||||| ||| Sbjct 194999 TCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 194940 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | || || ||||| ||| || ||||||||||| |||||||| || || ||| | Sbjct 194939 ATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 194880 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 ||||| ||||| || | ||||| ||||| ||||||||||| ||||||| ||||| || Sbjct 194879 TCGATCGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACA 194820 Query 283089 AATATCTGCAT 283099 || || ||||| Sbjct 194819 AAGATTTGCAT 194809 Score = 138 bits (152), Expect = 2e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282951 AGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGG 283010 || || || |||||||||||||| || || ||||| ||| || ||||||||||| ||| Sbjct 195185 AGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGG 195126 Query 283011 ATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTA 283070 ||||| || || ||| | ||||| |||||||| | ||||| ||||| ||||||||||| Sbjct 195125 ATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTG 195066 Query 283071 CCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||| ||||| |||||||| Sbjct 195065 CCCGTGAGGGTCTTGACGAAGATCTGCAT 195037 >seq17 Length=321613 Score = 129 bits (142), Expect = 1e-24 Identities = 122/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || |||||||||||||| | || |||||||| ||||| || || || ||||||||| Sbjct 237393 TCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAG 237334 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 || | ||| || ||||| || || ||||||||||| |||||||| || || ||| | Sbjct 237333 ATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 237274 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 ||||| |||||||| | ||||| || || |||||| Sbjct 237273 TCGATCGTGTCCGACGACTCGACCTCAAGGGTGATC 237238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046737107830024