Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20sp._20JG-1b_20[genbank_20GCA_5F001541205.1_202016-01- 26] 156 sequences; 19,393,393 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq30 163 3e-35 seq45 140 3e-28 seq13 118 1e-21 seq17 109 5e-19 >seq30 Length=195187 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || || || || || ||||||||| ||||| || || || Sbjct 195036 GCCGCCGCGGAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 194977 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| |||| |||||||||||||||||||| || |||||||| ||||| | || Sbjct 194976 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 194917 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | || |||||||||| || | || || | ||| | | | |||||| |||||| | Sbjct 194916 GATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGA 194858 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | ||| ||||| || |||||||| ||||| || || || ||||| Sbjct 194857 CCTCGAGCGTGATCGTCTTGCCCGTCAGGGTCTTGACAAAGATTTGCAT 194809 Score = 98.7 bits (108), Expect = 9e-16 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 |||||||||||||||| || |||| |||||| ||||| | || | || |||||||||| Sbjct 195187 CGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC- 195129 Query 41772 TGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 || | || || | ||| | | | ||||| ||||| ||||| | ||| ||||| Sbjct 195128 TGGATCTTGGCCTTGACGTTGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTC 195069 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| || ||||| ||||| ||||||||| Sbjct 195068 TTGCCCGTGAGGGTCTTGACGAAGATCTGCATG 195036 >seq45 Length=127924 Score = 140 bits (154), Expect = 3e-28 Identities = 149/194 (77%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| || || ||||||||||| |||| ||||||||||||||||| || Sbjct 313 CTCCTTCTGGATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 254 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| |||||| ||||| | || | || |||||||||| || | || || | ||| Sbjct 253 GATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGT 195 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | ||||| ||||| ||||| | ||| ||||| || ||||| || ||||| | Sbjct 194 TGTCGATCGTGTCCGAGGACTCGACCTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGA 135 Query 41850 CGAAAATCTGCATG 41863 |||| ||||||||| Sbjct 134 CGAAGATCTGCATG 121 Score = 107 bits (118), Expect = 2e-18 Identities = 92/114 (81%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| ||||| | || || || || || ||||||||| ||||| || || || Sbjct 121 GCCGCCGCGGAGACGGAGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 62 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||||||||| |||| ||||||||||||||||| || |||| |||||| ||||| Sbjct 61 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAAGCGCTGCTGGTC 8 >seq13 Length=349228 Score = 118 bits (130), Expect = 1e-21 Identities = 131/172 (76%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| ||||| ||||| |||| ||||||||||||||||| || Sbjct 151880 CTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 151821 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| ||||| | ||| | || |||||||||| || | || || | ||| Sbjct 151820 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGT 151762 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAG 41841 | | | |||||| |||||| ||||| | || ||||| || ||||| || Sbjct 151761 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGATCGTCTTGCCCGTGAG 151710 >seq17 Length=321613 Score = 109 bits (120), Expect = 5e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| ||||||||||| |||| ||||||||||||||||| || Sbjct 237394 CTCCTTCTGGATGTTGTAGTCCGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 237335 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTT 41778 || || ||||| ||||| | ||| | || |||||||||| ||| || Sbjct 237334 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTT 237287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303098507200