Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq236 104 5e-17
seq197 104 5e-17
seq189 104 5e-17
seq173 104 5e-17
seq61 104 5e-17
seq57 104 5e-17
seq216 91.5 3e-13
>seq236
Length=218215
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 216089 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 216148
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 216149 CCCACATTGGGC 216160
>seq197
Length=268270
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 89561 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 89620
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 89621 CCCACATTGGGC 89632
>seq189
Length=636660
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 103466 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 103407
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 103406 CCCACATTGGGC 103395
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 116499 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 116558
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 116559 CCCACATTGGGC 116570
>seq173
Length=350542
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 349979 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 350038
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 350039 CCCACATTGGGC 350050
>seq61
Length=13991
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 8603 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 8544
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 8543 CCCACATTGGGC 8532
>seq57
Length=416566
Score = 104 bits (114), Expect = 5e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 127427 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 127486
Query 165770 CCCACGATGGGC 165781
||||| |||||
Sbjct 127487 CCCACATTGGGC 127498
>seq216
Length=137410
Score = 91.5 bits (100), Expect = 3e-13
Identities = 112/152 (74%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 230441 GTCGCCTT-ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGAC 230499
|||| ||| || ||||||||||| || ||| ||||||||||||| ||||| || |||
Sbjct 25243 GTCGGCTTGATCGGCATGAACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGCGGAC 25184
Query 230500 CGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTT 230559
|| | |||| || || || |||| || ||||||| | ||||||| || | |||
Sbjct 25183 CGATTGCTTGTCGCGCTCGGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGACTTT 25124
Query 230560 ATGGAGCTCATTTCGCTTCAAGGGAAGACCAA 230591
|||||| | || ||| | | || ||||||||
Sbjct 25123 ATGGAGATGATCTCGATGGAGGGCAAGACCAA 25092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1057820679424350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |