Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq216 136 4e-27 seq33 136 4e-27 seq186 122 9e-23 seq222 109 6e-19 seq217 104 2e-17 seq176 96.9 4e-15 seq212 89.7 5e-13 >seq216 Length=137410 Score = 136 bits (150), Expect = 4e-27 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748 |||| | || |||||| | | |||||||| || ||| ||||||||||| || ||||| Sbjct 26022 GGACATTTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGGCACTTCAT 25963 Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808 | ||| || || ||||| ||||||||| ||||||||||| |||||||| |||| || Sbjct 25962 CTCGCATGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGA 25903 Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866 | | ||| | ||||||||| | |||||||| || || |||||||| || |||||| Sbjct 25902 GAGGTTCTCGGCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGATC 25845 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||||||||||||||| || |||||| | | | | |||| ||| | || || | Sbjct 25615 AGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTCTTTGCGGAACGAC 25556 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || | Sbjct 25555 TGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 25496 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 |||||||||| || ||| | |||||||| |||| ||| Sbjct 25495 GGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTC 25458 >seq33 Length=99298 Score = 136 bits (150), Expect = 4e-27 Identities = 135/172 (78%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027 || ||| || | ||||||||||||||||||| |||||| | | | ||| | ||| Sbjct 51327 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGAC-GAGCGCTCCGT 51385 Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087 ||||||||||||||| || || ||||| |||||||||||| ||||||| || ||| || Sbjct 51386 CTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 51445 Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139 ||| |||| || ||||||||||| |||||| | |||||||| || || ||| Sbjct 51446 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 51497 Score = 105 bits (116), Expect = 7e-18 Identities = 202/295 (68%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202 |||||||||||||| | ||||||||||| || |||||||||||| | || ||| | Sbjct 51599 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 51658 Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261 || | | || || || | | || || ||| | ||| | ||| ||||||| Sbjct 51659 CACCTCGAGCGCCGCCCTCACCCCGAAACG-GTCGAGCGCATCATTCGCGAGGCGGTCGA 51717 Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321 ||||||||| ||||||||||| |||||||| || || | || | || |||| Sbjct 51718 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAGCGA 51777 Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381 |||| || |||||||||||||| || ||| | |||| ||| || | | || Sbjct 51778 CCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAACGA 51837 Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436 ||| |||| ||| | |||||| | ||||||||| || | ||||| ||||| Sbjct 51838 GAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 51892 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||||||| |||||| || ||||| || Sbjct 327 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAG 268 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| || || || || |||||||||||||| ||| | || || || || ||| || Sbjct 267 GACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTG 208 Query 40903 CG 40904 || Sbjct 207 CG 206 >seq186 Length=108833 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | | Sbjct 60948 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 60889 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || |||| ||||| ||||||||||| | |||||| Sbjct 60888 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 60829 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || | |||| |||||| || ||||| || || | || || || || |||||| Sbjct 60828 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 60769 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || || || || ||| |||| Sbjct 60768 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCG 60734 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | |||||| | | |||| |||||| || |||| || Sbjct 60029 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAAGGCCAAGATTCAGGA 59971 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| ||||||||||| | |||||||| || | |||| |||||| || ||||| || || Sbjct 59970 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 59911 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || ||||| || | || |||||||| || ||||| | || ||||| || || ||| | Sbjct 59910 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 59851 Query 40905 CTTGAGGGGCGG 40916 ||| | || || Sbjct 59850 GTTGCGCGGTGG 59839 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/180 (72%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | |||| |||||| || |||| || Sbjct 60329 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATTCAGGA 60271 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||| || | |||||||| || | |||| |||||| || ||||| || || Sbjct 60270 CAAGGAGGGCATTCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 60211 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || || |||||||||||||| ||| | || || || || ||| |||| Sbjct 60210 CGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCG 60151 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| || || | | |||| | || |||| |||||| || || | || Sbjct 60620 ATCACCCTCGAGGTTGAGTCGTCTGACACGATTGACAACG-TCAAGGCCAAGATCCAGGA 60562 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| ||||| ||||| | |||||||| || | |||| |||||| || ||||| || || Sbjct 60561 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 60502 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 | || || || ||||| ||| ||||||||||| | || || || || ||| |||| Sbjct 60501 TGGTCGTACTCTTTCGGACTATAACGTCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCG 60442 >seq222 Length=148624 Score = 109 bits (120), Expect = 6e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| |||||||||||| | |||||||| || | |||| || Sbjct 95088 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCG 95029 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 ||||||| ||||| || |||| ||||| ||| ||||||||||||||||||||| | | Sbjct 95028 CGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGA 94969 Query 40886 CGCTGCATCTAGT 40898 | || || || || Sbjct 94968 CCCTCCACCTCGT 94956 >seq217 Length=194401 Score = 104 bits (114), Expect = 2e-17 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784 |||||| |||| ||||| | | |||| | | |||| |||||| || || | || Sbjct 61026 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 61084 Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 ||| |||||||||||| | |||||||| || ||||||| || ||||| ||||| || || Sbjct 61085 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 61144 Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || ||||| || ||||||||||| ||||||||| | || || || || || Sbjct 61145 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 61198 >seq176 Length=250200 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| ||||||||||| | |||||||| || ||||| | || Sbjct 112936 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCG 112877 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 |||| || ||||| || ||| ||||| ||| | |||||||| | || | ||| | | Sbjct 112876 CGGGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGA 112817 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 | || ||||| || |||||| | | ||||||| Sbjct 112816 CCCTTCATCTCGTCTTGCGCCTACGCGGCGGCG 112784 >seq212 Length=194347 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||||||||| | |||||||| || ||| | | || ||||| |||||||| Sbjct 23501 GACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTCTTGTTCGGCGGCAAGCAGCTGGAG 23442 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| ||| ||| | || | || ||||||||||| || || || Sbjct 23441 GACGCCCGCACCCTCGCCGAGTACTGCGTCGCGCGTGATGCCACGCTGCACCTGCTGCTG 23382 Query 40903 CGCTTGAGGGGCGGCGG 40919 ||| || | ||||| || Sbjct 23381 CGCCTGCGCGGCGGGGG 23365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217622141200