Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq216 136 4e-27
seq33 136 4e-27
seq186 122 9e-23
seq222 109 6e-19
seq217 104 2e-17
seq176 96.9 4e-15
seq212 89.7 5e-13
>seq216
Length=137410
Score = 136 bits (150), Expect = 4e-27
Identities = 137/178 (77%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 116689 GGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCAT 116748
|||| | || |||||| | | |||||||| || ||| ||||||||||| || |||||
Sbjct 26022 GGACATTTCGAAGGACCTGTGGGACTGGGACCGACTGACGGACAACGAGCGGCACTTCAT 25963
Query 116749 CAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGA 116808
| ||| || || ||||| ||||||||| ||||||||||| |||||||| |||| ||
Sbjct 25962 CTCGCATGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGA 25903
Query 116809 GCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATC 116866
| | ||| | ||||||||| | |||||||| || || |||||||| || ||||||
Sbjct 25902 GAGGTTCTCGGCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGATC 25845
Score = 118 bits (130), Expect = 1e-21
Identities = 121/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||||||||||||||| || |||||| | | | | |||| ||| | || || |
Sbjct 25615 AGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTCTTTGCGGAACGAC 25556
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||| || ||||| || ||||||||| ||||||| || ||| |||||| | || || |
Sbjct 25555 TGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCCTCGATCTTCT 25496
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
|||||||||| || ||| | |||||||| |||| |||
Sbjct 25495 GGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTC 25458
>seq33
Length=99298
Score = 136 bits (150), Expect = 4e-27
Identities = 135/172 (78%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 116969 CCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGG-CCGC 117027
|| ||| || | ||||||||||||||||||| |||||| | | | ||| | |||
Sbjct 51327 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGAC-GAGCGCTCCGT 51385
Query 117028 CTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTT 117087
||||||||||||||| || || ||||| |||||||||||| ||||||| || ||| ||
Sbjct 51386 CTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTT 51445
Query 117088 CGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTC 117139
||| |||| || ||||||||||| |||||| | |||||||| || || |||
Sbjct 51446 CGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTC 51497
Score = 105 bits (116), Expect = 7e-18
Identities = 202/295 (68%), Gaps = 2/295 (1%)
Strand=Plus/Plus
Query 117143 AACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAG 117202
|||||||||||||| | ||||||||||| || |||||||||||| | || ||| |
Sbjct 51599 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 51658
Query 117203 CATTTGGTGCAGCGACCG-AGCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGC 117261
|| | | || || || | | || || ||| | ||| | ||| |||||||
Sbjct 51659 CACCTCGAGCGCCGCCCTCACCCCGAAACG-GTCGAGCGCATCATTCGCGAGGCGGTCGA 51717
Query 117262 CATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGA 117321
||||||||| ||||||||||| |||||||| || || | || | || ||||
Sbjct 51718 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAGCGA 51777
Query 117322 AACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGC 117381
|||| || |||||||||||||| || ||| | |||| ||| || | | ||
Sbjct 51778 CCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAACGA 51837
Query 117382 CAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGGAG 117436
||| |||| ||| | |||||| | ||||||||| || | ||||| |||||
Sbjct 51838 GAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 51892
Score = 95.1 bits (104), Expect = 1e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||||||||| | |||||||| || ||||||| |||||| || ||||| ||
Sbjct 327 GACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGGAAGCAGCTCGAG 268
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| || || || || |||||||||||||| ||| | || || || || ||| ||
Sbjct 267 GACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTG 208
Query 40903 CG 40904
||
Sbjct 207 CG 206
>seq186
Length=108833
Score = 122 bits (134), Expect = 9e-23
Identities = 156/215 (73%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| || || | |
Sbjct 60948 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 60889
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | |||||| || |||| ||||| ||||||||||| | ||||||
Sbjct 60888 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 60829
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || | |||| |||||| || ||||| || || | || || || || ||||||
Sbjct 60828 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 60769
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| | || || || || ||| ||||
Sbjct 60768 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCG 60734
Score = 105 bits (116), Expect = 7e-18
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| ||||| | |||||| | | |||| |||||| || |||| ||
Sbjct 60029 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACG-TCAAGGCCAAGATTCAGGA 59971
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| ||||||||||| | |||||||| || | |||| |||||| || ||||| || ||
Sbjct 59970 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 59911
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| ||||| || | || |||||||| || ||||| | || ||||| || || ||| |
Sbjct 59910 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAG 59851
Query 40905 CTTGAGGGGCGG 40916
||| | || ||
Sbjct 59850 GTTGCGCGGTGG 59839
Score = 93.3 bits (102), Expect = 4e-14
Identities = 130/180 (72%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| ||||| | | |||| | | |||| |||||| || |||| ||
Sbjct 60329 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATTCAGGA 60271
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| |||||||| || | |||||||| || | |||| |||||| || ||||| || ||
Sbjct 60270 CAAGGAGGGCATTCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 60211
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| || || || || |||||||||||||| ||| | || || || || ||| ||||
Sbjct 60210 CGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCTGCG 60151
Score = 84.2 bits (92), Expect = 2e-11
Identities = 128/180 (71%), Gaps = 2/180 (1%)
Strand=Plus/Minus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| || || | | |||| | || |||| |||||| || || | ||
Sbjct 60620 ATCACCCTCGAGGTTGAGTCGTCTGACACGATTGACAACG-TCAAGGCCAAGATCCAGGA 60562
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| ||||| ||||| | |||||||| || | |||| |||||| || ||||| || ||
Sbjct 60561 CAAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGA 60502
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
| || || || ||||| ||| ||||||||||| | || || || || ||| ||||
Sbjct 60501 TGGTCGTACTCTTTCGGACTATAACGTCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCG 60442
>seq222
Length=148624
Score = 109 bits (120), Expect = 6e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| |||||||||||| | |||||||| || | |||| ||
Sbjct 95088 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCG 95029
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
||||||| ||||| || |||| ||||| ||| ||||||||||||||||||||| | |
Sbjct 95028 CGGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGA 94969
Query 40886 CGCTGCATCTAGT 40898
| || || || ||
Sbjct 94968 CCCTCCACCTCGT 94956
>seq217
Length=194401
Score = 104 bits (114), Expect = 2e-17
Identities = 129/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 40726 ATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGA 40784
|||||| |||| ||||| | | |||| | | |||| |||||| || || | ||
Sbjct 61026 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 61084
Query 40785 CAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844
||| |||||||||||| | |||||||| || ||||||| || ||||| ||||| || ||
Sbjct 61085 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 61144
Query 40845 CGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| ||||| || ||||||||||| ||||||||| | || || || || ||
Sbjct 61145 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGT 61198
>seq176
Length=250200
Score = 96.9 bits (106), Expect = 4e-15
Identities = 113/153 (74%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| ||||||||||| | |||||||| || ||||| | ||
Sbjct 112936 TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCG 112877
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
|||| || ||||| || ||| ||||| ||| | |||||||| | || | ||| | |
Sbjct 112876 CGGGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGA 112817
Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918
| || ||||| || |||||| | | |||||||
Sbjct 112816 CCCTTCATCTCGTCTTGCGCCTACGCGGCGGCG 112784
>seq212
Length=194347
Score = 89.7 bits (98), Expect = 5e-13
Identities = 102/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||||||||| | |||||||| || ||| | | || ||||| ||||||||
Sbjct 23501 GACAAGGAGGGCATCCCGCCTGACCAGCAGCGCCTCTTGTTCGGCGGCAAGCAGCTGGAG 23442
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||||||| ||| ||| | || | || ||||||||||| || || ||
Sbjct 23441 GACGCCCGCACCCTCGCCGAGTACTGCGTCGCGCGTGATGCCACGCTGCACCTGCTGCTG 23382
Query 40903 CGCTTGAGGGGCGGCGG 40919
||| || | ||||| ||
Sbjct 23381 CGCCTGCGCGGCGGGGG 23365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515217622141200
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