Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq145 315 6e-81
seq186 105 6e-18
seq33 98.7 9e-16
seq156 84.2 2e-11
>seq145
Length=5427
Score = 315 bits (348), Expect = 6e-81
Identities = 515/740 (70%), Gaps = 4/740 (1%)
Strand=Plus/Minus
Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203
||||||||||||||| | || |||||||||||||||| | ||||| ||| || |||
Sbjct 4368 TCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTACCAG 4309
Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263
| |||| ||| ||| ||| | | || || | ||| ||||| | | ||| |
Sbjct 4308 AGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAACAGC 4249
Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGA 23321
| | || ||| | ||||| ||| |||||||| | | ||| || || | ||
Sbjct 4248 TCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCA--GGGCAGAAGA 4191
Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381
| ||| || | || || || ||| || || || || ||||| || ||
Sbjct 4190 GGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAA 4131
Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441
|||||| ||||| ||||| |||||||| |||||| |||||| | || | || |
Sbjct 4130 AGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACT 4071
Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501
| || | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| ||||
Sbjct 4070 CGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGC 4011
Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561
||||||| |||||||| || || |||||||||||||| | ||||| || | || ||||
Sbjct 4010 CGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGT 3951
Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621
| || |||| ||| || | ||| || | || || | |||||| | ||
Sbjct 3950 TCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGA 3891
Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681
||| ||||| ||| ||| || || || | |||||| || || |||||||||||||
Sbjct 3890 GACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGC 3831
Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741
||||||| ||| || || ||| ||| | ||| ||||| || | |||| | ||||
Sbjct 3830 CCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCG 3771
Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801
| |||| ||| || ||||| ||||||||||||||| | | |||||| || ||||
Sbjct 3770 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 3711
Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861
|||| ||||| ||| |||||||| || ||||| || |||| ||||| ||||| | ||
Sbjct 3710 ACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCA 3651
Query 23862 TGTATTGAGGTCTCTCGACC 23881
||| || |||| |||| ||
Sbjct 3650 TGTGCTGCGGTCGCTCGGCC 3631
Score = 150 bits (166), Expect = 2e-31
Identities = 310/457 (68%), Gaps = 7/457 (2%)
Strand=Plus/Minus
Query 22238 ACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAAT 22297
|| |||| |||||| ||| ||||| |||||||| || ||||||| | | || |
Sbjct 5424 ACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACG 5365
Query 22298 GTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC-TAACGG-TATCG 22355
| ||| || ||||| || |||||||| | || ||| ||| | | || || ||
Sbjct 5364 ACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCG 5305
Query 22356 ATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCC 22415
|| |||||| || ||||| | |||||| || || |||| |||||||
Sbjct 5304 GG--GACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCC 5247
Query 22416 ACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGG 22475
||| ||| | || | || || || |||| || ||||| ||||||||||
Sbjct 5246 ACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGG 5187
Query 22476 ACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCA 22535
| ||| ||||| ||| |||||||| ||| |||| ||||| | || ||| || |
Sbjct 5186 CGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAA 5127
Query 22536 GTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGT 22595
| |||||| |||||| ||||||||||||||||| | | |||||||| | | |||||
Sbjct 5126 GGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGT 5067
Query 22596 GCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGT 22655
||| | ||| || ||| | | | |||||||||||| || | |||||| || ||
Sbjct 5066 GCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGAC---GT 5010
Query 22656 CCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692
||||| ||||| ||||| | |||| | ||||| ||
Sbjct 5009 TCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGG 4973
>seq186
Length=108833
Score = 105 bits (116), Expect = 6e-18
Identities = 151/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| ||||
Sbjct 60949 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 60890
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| |||| | ||||| | || ||||||||| ||| | || ||||||||
Sbjct 60889 GGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 60830
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| | || ||||| || || ||| | || || | ||| | ||||| ||
Sbjct 60829 GCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAA 60770
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || || || ||||| ||||| || || ||
Sbjct 60769 CATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 60737
Score = 84.2 bits (92), Expect = 2e-11
Identities = 123/174 (71%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287
||||||| |||| || || ||||||||| |||| | ||||| | || |||
Sbjct 60030 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 59971
Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347
|||||| ||| | ||||||||||||||||| | || ||||| || || ||| | || ||
Sbjct 59970 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 59911
Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401
| || | ||||| ||||||||||| |||||||| || || || ||
Sbjct 59910 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGT 59857
>seq33
Length=99298
Score = 98.7 bits (108), Expect = 9e-16
Identities = 212/311 (68%), Gaps = 12/311 (4%)
Strand=Plus/Plus
Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136
|||||| | || |||||||||||||||||||| || || ||||| ||||| | | |||
Sbjct 51599 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 51658
Query 58137 CACATTGTCAATAAACCG-ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195
||| | | || || | | | || || | ||| || |||||||||||
Sbjct 51659 CACCTCGAGCGCCGCCCTCACCCCGAAACGG-TCGAGCGCATCATTCGCGAGGCGGTCGA 51717
Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC---TCGGTATGAACAA 58252
|||||| | ||||| ||||||| || || || || || || |||| |||||||
Sbjct 51718 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGT---CAAGCTTATCGGCATGAACAG 51774
Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATT 58310
|| | |||| ||||||| ||||| || || ||| || | | ||| ||| |
Sbjct 51775 CGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAA 51834
Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370
|||| || ||| ||| | | || ||||| || |||||| | |||||||| | |||
Sbjct 51835 CGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 51892
Query 58371 GGCAAGACAAA 58381
|||||||| ||
Sbjct 51893 GGCAAGACCAA 51903
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/162 (72%), Gaps = 8/162 (5%)
Strand=Plus/Plus
Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGA 57970
|||||||| |||||| | ||| ||||| | ||||| || | |||| |||
Sbjct 51339 AAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGACGAGCGCTCCGTC----TTCGGCGA 51394
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | || ||||||||||||||||||| || || ||||| || ||| || ||| | ||
Sbjct 51395 GCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCAT 51454
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072
|| ||| | ||||| |||||| |||||||||| || || ||
Sbjct 51455 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 51496
>seq156
Length=1186
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344
||||||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | ||
Sbjct 333 GGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGA 274
Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
||| || | ||||| ||||||||||| || || ||||| || || ||||| ||
Sbjct 273 GGACGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 214
Query 31405 T 31405
|
Sbjct 213 T 213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445765034840400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |