Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq145 315 6e-81 seq186 105 6e-18 seq33 98.7 9e-16 seq156 84.2 2e-11 >seq145 Length=5427 Score = 315 bits (348), Expect = 6e-81 Identities = 515/740 (70%), Gaps = 4/740 (1%) Strand=Plus/Minus Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || |||||||||||||||| | ||||| ||| || ||| Sbjct 4368 TCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTACCAG 4309 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAAC 23263 | |||| ||| ||| ||| | | || || | ||| ||||| | | ||| | Sbjct 4308 AGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAACAGC 4249 Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATT--GCATCGGACACATGA 23321 | | || ||| | ||||| ||| |||||||| | | ||| || || | || Sbjct 4248 TCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCA--GGGCAGAAGA 4191 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 | ||| || | || || || ||| || || || || ||||| || || Sbjct 4190 GGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAA 4131 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||||| ||||| ||||| |||||||| |||||| |||||| | || | || | Sbjct 4130 AGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACT 4071 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || | ||| || ||||||||||||||||| | ||| ||||||||||| | ||| |||| Sbjct 4070 CGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGC 4011 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 ||||||| |||||||| || || |||||||||||||| | ||||| || | || |||| Sbjct 4010 CGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGT 3951 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 | || |||| ||| || | ||| || | || || | |||||| | || Sbjct 3950 TCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGA 3891 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||| ||||| ||| ||| || || || | |||||| || || ||||||||||||| Sbjct 3890 GACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGATGC 3831 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 ||||||| ||| || || ||| ||| | ||| ||||| || | |||| | |||| Sbjct 3830 CCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCG 3771 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 | |||| ||| || ||||| ||||||||||||||| | | |||||| || |||| Sbjct 3770 TGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGT 3711 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 |||| ||||| ||| |||||||| || ||||| || |||| ||||| ||||| | || Sbjct 3710 ACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCA 3651 Query 23862 TGTATTGAGGTCTCTCGACC 23881 ||| || |||| |||| || Sbjct 3650 TGTGCTGCGGTCGCTCGGCC 3631 Score = 150 bits (166), Expect = 2e-31 Identities = 310/457 (68%), Gaps = 7/457 (2%) Strand=Plus/Minus Query 22238 ACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCATATTTATCAAT 22297 || |||| |||||| ||| ||||| |||||||| || ||||||| | | || | Sbjct 5424 ACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACG 5365 Query 22298 GTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC-TAACGG-TATCG 22355 | ||| || ||||| || |||||||| | || ||| ||| | | || || || Sbjct 5364 ACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCG 5305 Query 22356 ATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATCGTATCGTTCC 22415 || |||||| || ||||| | |||||| || || |||| ||||||| Sbjct 5304 GG--GACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCC 5247 Query 22416 ACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAACTCGCCGG 22475 ||| ||| | || | || || || |||| || ||||| |||||||||| Sbjct 5246 ACAGGCCGCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGG 5187 Query 22476 ACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCA 22535 | ||| ||||| ||| |||||||| ||| |||| ||||| | || ||| || | Sbjct 5186 CGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAA 5127 Query 22536 GTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGT 22595 | |||||| |||||| ||||||||||||||||| | | |||||||| | | ||||| Sbjct 5126 GGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGT 5067 Query 22596 GCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGT 22655 ||| | ||| || ||| | | | |||||||||||| || | |||||| || || Sbjct 5066 GCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGAC---GT 5010 Query 22656 CCCACATATCGTATTGCAACACGCCGCGACTCGCCGG 22692 ||||| ||||| ||||| | |||| | ||||| || Sbjct 5009 TCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGG 4973 >seq186 Length=108833 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| ||||| |||| Sbjct 60949 CATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTC 60890 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| | || ||||||||| ||| | || |||||||| Sbjct 60889 GGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCA 60830 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || || ||| | || || | ||| | ||||| || Sbjct 60829 GCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAA 60770 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| ||||| || || || Sbjct 60769 CATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 60737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 31228 GATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGA 31287 ||||||| |||| || || ||||||||| |||| | ||||| | || ||| Sbjct 60030 GATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGA 59971 Query 31288 CAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| ||| | ||||||||||||||||| | || ||||| || || ||| | || || Sbjct 59970 CAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA 59911 Query 31348 CTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | || | ||||| ||||||||||| |||||||| || || || || Sbjct 59910 CGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGT 59857 >seq33 Length=99298 Score = 98.7 bits (108), Expect = 9e-16 Identities = 212/311 (68%), Gaps = 12/311 (4%) Strand=Plus/Plus Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCT 58136 |||||| | || |||||||||||||||||||| || || ||||| ||||| | | ||| Sbjct 51599 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCG 51658 Query 58137 CACATTGTCAATAAACCG-ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 ||| | | || || | | | || || | ||| || ||||||||||| Sbjct 51659 CACCTCGAGCGCCGCCCTCACCCCGAAACGG-TCGAGCGCATCATTCGCGAGGCGGTCGA 51717 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC---TCGGTATGAACAA 58252 |||||| | ||||| ||||||| || || || || || || |||| ||||||| Sbjct 51718 GATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGT---CAAGCTTATCGGCATGAACAG 51774 Query 58253 TGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATT 58310 || | |||| ||||||| ||||| || || ||| || | | ||| ||| | Sbjct 51775 CGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCAA 51834 Query 58311 GGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 |||| || ||| ||| | | || ||||| || |||||| | |||||||| | ||| Sbjct 51835 CGAGAAGATC--TACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 51892 Query 58371 GGCAAGACAAA 58381 |||||||| || Sbjct 51893 GGCAAGACCAA 51903 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 8/162 (5%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGCCACGTTCGCCGA 57970 |||||||| |||||| | ||| ||||| | ||||| || | |||| ||| Sbjct 51339 AAGAAGGCCGAGTGGGCGCTCACTTGGATCTCGGACGAGCGCTCCGTC----TTCGGCGA 51394 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | || ||||||||||||||||||| || || ||||| || ||| || ||| | || Sbjct 51395 GCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCAT 51454 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTT 58072 || ||| | ||||| |||||| |||||||||| || || || Sbjct 51455 CTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTT 51496 >seq156 Length=1186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| ||| | ||||| ||||||||||| | || ||||| ||||| ||| | || Sbjct 333 GGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTTGA 274 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || | ||||| ||||||||||| || || ||||| || || ||||| || Sbjct 273 GGACGGGCGCACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTGCACCTGGTGCT 214 Query 31405 T 31405 | Sbjct 213 T 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765034840400