Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq145 100 4e-16 seq33 95.1 2e-14 seq168 87.8 3e-12 >seq145 Length=5427 Score = 100 bits (110), Expect = 4e-16 Identities = 287/436 (66%), Gaps = 4/436 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || |||||| || | | ||| | | || |||||| | ||||||| | | || Sbjct 3935 ACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGC 3994 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || || || ||||| | ||| ||||| | || || ||| Sbjct 3995 TACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGG 4054 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||||| ||| | || || || |||| | ||||| ||| ||| || |||| || Sbjct 4055 CACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGC 4114 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGAC 97046 || | |||||||| | ||| |||||| | || || | |||||| |||| ||| | | Sbjct 4115 GCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAG 4174 Query 97047 GGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGC 97106 ||| ||||| ||| | ||||| | | | ||||||| || ||| || ||| Sbjct 4175 AACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGC 4234 Query 97107 GAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG-ACGAGT 97165 || ||||| ||| || | | || ||| | ||||| || | | | || | | Sbjct 4235 GACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATT 4294 Query 97166 CGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | || | |||| || ||| | |||||| | ||| ||||| ||||| || | || | Sbjct 4295 C-CCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCT 4352 Query 97225 ACATTCTCTACAAGGA 97240 ||| ||||||||||| Sbjct 4353 TCATGCTCTACAAGGA 4368 >seq33 Length=99298 Score = 95.1 bits (104), Expect = 2e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTT 125486 || || || ||||||||||| |||||||||||||| || || || ||| ||||||| Sbjct 51399 CTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGTTCGCGTCCATCTTC 51458 Query 125487 TGGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 ||||||||||||||||| | ||||||||||| || Sbjct 51459 TGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCAC 51493 >seq168 Length=203964 Score = 87.8 bits (96), Expect = 3e-12 Identities = 216/320 (68%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 127447 CCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTA 127506 |||||||||| ||| || ||||||| || | ||| |||||||| | | || || | Sbjct 197502 CCGTGCGTCAAGTGTCCGCCGTCGGCGAGGTTGAGGCCCATGATGCGGTCCTGAGGCTGG 197561 Query 127507 ACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACT 127566 | || | ||| | ||||||||||||| ||||||||||||| || || || || Sbjct 197562 ATGAGCGCGGTGAAGGCGGCAAAGTTGGCGGTCGAGCCCGAGTAAGGCTGGACGTTGACG 197621 Query 127567 CCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCG 127626 ||||| || ||| | | |||||| ||| |||| ||| | || ||| Sbjct 197622 CCCCACCTGGCGCCGTCGAGGTGGAACGCCTCGAGCGCGCGCTTCTGGCACAACACCTCG 197681 Query 127627 A-TGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTA 127685 | | || |||| | |||||| || || ||||| || || || |||||||||||| Sbjct 197682 AGTTCG-TCGACGACCTCGTTGCCGCCGTAGTAGCGAGCGCCCGGGAGACCCTCCGAGTA 197740 Query 127686 CTTGTTGATG-AGACACGAACTCAT-GCATTCTCGCACCGGTAGAGTGGTAAAGTTTTCC 127743 ||||||| || |||| ||| | | || | | | |||| || | ||| | ||| || Sbjct 197741 CTTGTTGGTGAAGAC-CGAGCCGTTGGCCTGCATG-ACCGCGAGCGAGGTGAGGTTCTCG 197798 Query 127744 GATGCGATCAACTCTAAGCC 127763 || ||||||| ||| | ||| Sbjct 197799 GACGCGATCAGCTCGAGGCC 197818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056930506200