Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq186 129 6e-25 seq145 122 8e-23 seq156 118 1e-21 seq222 104 2e-17 seq33 102 8e-17 seq217 89.7 5e-13 seq176 82.4 7e-11 >seq186 Length=108833 Score = 129 bits (142), Expect = 6e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | |||||||||||| || ||||||||||| Sbjct 60721 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 60780 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 60781 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 60840 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| || || ||||| | || | || || | ||||| | Sbjct 60841 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAAC 60900 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| ||| | ||| || ||||| || || || ||||| ||||||||| Sbjct 60901 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATG 60949 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||||||||| | || || | || | |||||| |||||||||||||||||||| Sbjct 59839 CCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTGA 59898 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| |||||||| || ||| |||| || ||||||||||| || ||| Sbjct 59899 AGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGGG 59958 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | || |||| ||||||| Sbjct 59959 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTCGGACGACTCGACC 60018 Query 131188 TCGACGGT 131195 |||| ||| Sbjct 60019 TCGAGGGT 60026 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 60138 GCCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 60197 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || |||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 60198 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 60257 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 60258 AATGCCCTCCTTGTC 60272 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | ||||||||| | || | |||||||||||| || | ||| || || Sbjct 60429 GCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGACGTTATAGTCCGA 60488 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || || ||||| |||||||| || ||| |||| || ||||||||||| ||||| Sbjct 60489 AAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGG 60548 Query 131127 GATTCCTTCTTTGTC 131141 |||||| || ||||| Sbjct 60549 GATTCCCTCCTTGTC 60563 >seq145 Length=5427 Score = 122 bits (134), Expect = 8e-23 Identities = 498/765 (65%), Gaps = 29/765 (4%) Strand=Plus/Minus Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795 |||||| |||||||||||||||||| | || ||| ||||| ||||| | ||| | | Sbjct 4380 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 4321 Query 145796 ATAAAACGGTGCA-AG-TCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCG 145852 || || || || | ||| || | | ||| ||| | ||| ||||| | || Sbjct 4320 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 4264 Query 145853 TATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTG 145912 || ||| | | ||||||| ||| || |||||| ||| |||||||| || | Sbjct 4263 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 4204 Query 145913 TTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGC 145972 || || | || | ||| ||||||| | ||| |||||||| || | || || Sbjct 4203 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 4144 Query 145973 ACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGTT-TCGCTT 146031 | ||| || || | | |||||||||||| | ||||| || ||| | || Sbjct 4143 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 4084 Query 146032 CAAATTAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCC 146091 | | || | | ||||||| ||||||||||| || | |||| ||||| || || Sbjct 4083 AGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCC 4025 Query 146092 TTTTCGTTTG---CCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCAT 146148 || ||| || |||||||| |||| || | ||||||| | ||||| | ||| Sbjct 4024 CGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCAT 3965 Query 146149 GGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCAC 146208 ||| || |||| | | ||||||||| | || | |||| | ||| | Sbjct 3964 GGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGAT 3905 Query 146209 GCAATGAACATTCACGCCGAGACCGCCG-CCGTACTTGGATAT-AGCGGCGCA-GTCGCC 146265 | || | | |||| |||||| |||| |||||| || |||| |||| ||| Sbjct 3904 GTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCG-CGCACGTCTT- 3848 Query 146266 GAGCGTCTCGTAGATGCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAG 146323 |||||| ||||||||||| || || ||| |||| || || || |||||||| Sbjct 3847 GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTC--ATCGTGACGAGGAAGCACGAC 3790 Query 146324 CACATCTGCGCCATCGGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATT 146383 | | ||||| |||||| || || ||| | |||||| ||||||||||| Sbjct 3789 GAGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAA---- 3734 Query 146384 TTTCGGCT----CATCATCCGATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAAT 146439 | | ||| ||| | ||||| ||||| ||| | |||||||||||| || || Sbjct 3733 GTACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGAT 3674 Query 146440 GCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCGCTCCGCCAC 146484 ||| | ||||| |||||||||||||| || || ||||| ||||| Sbjct 3673 GCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCAC 3629 Score = 105 bits (116), Expect = 6e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 |||||||| || ||||||||||| | ||||| || || | ||| |||||| | || Sbjct 5208 TTGACGACTTGGAACTCGCCGGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGC 5149 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || || | |||||| ||| ||||| ||| ||||| ||||| ||||| ||| Sbjct 5148 TCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAG 5089 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || ||||| | |||||||| | || | ||||| | | |||| ||||| Sbjct 5088 ACGAGCGAGTTGCGGATGCCGTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCAC 5029 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGG 145293 || |||||| | |||| ||||| |||||||||||| | ||| | ||| ||||| Sbjct 5028 AGGTCCGTCGGCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGG 4973 >seq156 Length=1186 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||| | ||| ||||| | || | ||||||||||| |||||||| || ||||| Sbjct 198 GCCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCT 257 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| |||||| ||||||||||| ||| |||| || ||||||||||| || || Sbjct 258 GAGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGG 317 Query 131127 GATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 318 AATGCCCTCCTTGTC 332 >seq222 Length=148624 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || | || | |||||||||||| || |||||||| || Sbjct 94938 CCACCGCGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAG 94997 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| || ||||||||||| || ||| Sbjct 94998 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGGGGGG 95057 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTG 131162 || || || ||||| ||| || ||||| ||| Sbjct 95058 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACCTG 95092 >seq33 Length=99298 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||||||| | || | ||||||||| || || ||||||||||| Sbjct 194 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 253 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| |||||||| || ||| |||| | |||||||||||| |||||| Sbjct 254 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 313 Query 131128 ATTCCTTCTTTGTC 131141 || || || ||||| Sbjct 314 ATGCCCTCCTTGTC 327 >seq217 Length=194401 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 |||||||||||| ||||||||||| || | ||||| |||||| ||||||||||| Sbjct 61187 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 61128 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 || |||| | ||||||||||| || ||||| || || ||||| ||| || ||| Sbjct 61127 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 61068 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGT 131195 || | || | || || | ||||||| |||| ||| Sbjct 61067 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGT 61029 >seq176 Length=250200 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||| | |||| || | ||| | |||||| ||| |||||| ||||| || Sbjct 112785 GCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCTTC 112844 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| |||||| |||||||| || ||| | || | ||||||||||| ||||| Sbjct 112845 GAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGG 112904 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 112905 GATGCCCTCCTTGTC 112919 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472011354460800