Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq186 87.8 2e-12 >seq186 Length=108833 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| || || ||||| || || || | || || || || || Sbjct 59981 AAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAG 59922 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | ||||| ||||| | ||||||||||||||||| ||||| ||| | || Sbjct 59921 CAGCTTGAGGACGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCAC 59862 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | |||||| | |||||||| || Sbjct 59861 CTCGTTTTGAGGTTGCGCGGTGG 59839 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || || || | | Sbjct 60948 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 60889 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || |||| || ||||| ||||||||||| || || ||||| || Sbjct 60888 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 60829 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||| | |||||| || || | || ||||||||| Sbjct 60828 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 60769 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | || | || |||| | |||||||| Sbjct 60768 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGG 60722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419726746718425