Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq189 120 6e-22
seq236 114 3e-20
seq197 114 3e-20
seq173 114 3e-20
seq61 114 3e-20
seq57 114 3e-20
seq180 109 1e-18
seq198 98.7 2e-15
seq90 96.9 7e-15
seq145 87.8 4e-12
seq216 86.0 1e-11
>seq189
Length=636660
Score = 120 bits (132), Expect = 6e-22
Identities = 86/97 (89%), Gaps = 3/97 (3%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 103467 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 103408
Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCG 142599
|||||||| |||| || |||| | ||||| |||||
Sbjct 103407 CCCCACATTGGGC-GACTTCGC--TTTTTTGCTGGCG 103374
Score = 114 bits (126), Expect = 3e-20
Identities = 80/90 (89%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 142488 ACCGGGTGGTGAG--ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTA 142545
||||| |||| | | |||||||||||||||||||||||||| | |||||||||||||
Sbjct 116481 ACCGGCTGGTCAAGCACAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 116540
Query 142546 GTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575
||||||||||||||||||||||||| ||||
Sbjct 116541 GTGGTCGTGGGTTCGAGCCCCACATTGGGC 116570
>seq236
Length=218215
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 216088 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 216147
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 216148 CCCCACATTGGGC 216160
>seq197
Length=268270
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 89560 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 89619
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 89620 CCCCACATTGGGC 89632
>seq173
Length=350542
Score = 114 bits (126), Expect = 3e-20
Identities = 85/97 (88%), Gaps = 3/97 (3%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||
Sbjct 349979 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 350038
Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCGC 142600
||||||| |||| || |||| | ||||| || |||
Sbjct 350039 CCCACATTGGGC-GACTTCGC--TTTTTTGCTGTCGC 350072
>seq61
Length=13991
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 8604 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 8545
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 8544 CCCCACATTGGGC 8532
>seq57
Length=416566
Score = 114 bits (126), Expect = 3e-20
Identities = 69/73 (95%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 127426 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 127485
Query 142563 CCCCACATCGGGC 142575
|||||||| ||||
Sbjct 127486 CCCCACATTGGGC 127498
>seq180
Length=165537
Score = 109 bits (120), Expect = 1e-18
Identities = 156/217 (72%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757
||||| || ||||| ||||||||||||||||| || ||| | |||||||| || || ||
Sbjct 78530 GGTTCGCTCTCGGGCGGTTGGAAGATGAAGCTCGCGCTCGCCCGCGCCATCCT-CTTCGA 78472
Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817
||||| |||| || || || ||||| ||||||||| ||||| |||||| |||||
Sbjct 78471 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTCAACGTCGCCTG 78412
Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877
||| | | |||||| | || |||| | | || |||| ||||| ||||||
Sbjct 78411 GCTCGAGAACTACCTCTGCTCGCTCAAGACTTGCACCTCGATCATCGTCTCGCACGACAG 78352
Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914
|||||||| | ||| ||| | | |||| | |||
Sbjct 78351 CGGCTTCCTCAACAACGTCTGCACCGACATCCTCCAC 78315
Score = 95.1 bits (104), Expect = 2e-14
Identities = 128/176 (73%), Gaps = 3/176 (2%)
Strand=Plus/Minus
Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232
||| | ||||| || ||| | || ||||| || || |||| |||| | |||||||
Sbjct 77965 GTCCTCGGACCGAACGGTTCCGGCAAGTCGACGCTCGTCAAGCTCCTCGTCGCCGAGACC 77906
Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289
|| ||| |||| || | | |||||||| |||||| || || | ||||||||
Sbjct 77905 GAGCCCAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 77846
Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345
|||||||| |||||||||||||| ||||||| |||| ||| || ||| |||||
Sbjct 77845 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACCCCGCTCCAGTACAT 77790
Score = 93.3 bits (102), Expect = 9e-14
Identities = 154/220 (70%), Gaps = 2/220 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
|| ||||| ||||| |||| ||||||||||| || || | ||||| || || |||
Sbjct 78878 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCGTACGGCGCCAAGATCCTCCTCAAC 78819
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
| || |||| | |||||||||| |||| || |||||| || | ||| ||| ||
Sbjct 78818 ACGGCCACCCTCCGCCTCAAGCGTGGACACCGCTACGGTCTCTGTGGACGCAACGGATCG 78759
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATT-TCCTAACGC 279523
|| ||| || || |||||||| || | ||||||||| | || || || ||| | |
Sbjct 78758 GGCAAGTCGACCCTCATGCGCGCGATCGACAACGGTCAGGTCGAGGGCTTCCCCTCGCCC 78699
Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563
| ||||| | || | || || ||||||||| |||||
Sbjct 78698 GAC-GAGGTCCGCACGTTCTACGTCGAGCACGACGTCGAC 78660
>seq198
Length=50111
Score = 98.7 bits (108), Expect = 2e-15
Identities = 148/207 (71%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896
||||| ||||||||||| ||||||||||| || |||| || | | ||||| |||
Sbjct 14937 TGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 14878
Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956
|| || ||||| || | || ||| ||||||| ||||| || ||||| |||||||| |||
Sbjct 14877 GTCGTCGGTCGCGACAACTACGGTGTCTTCCCGCTCCGCGGAAAGCTCCTCAACGTTCGC 14818
Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014
|| || | | ||| || | || | || || ||||| || |||||||| |||
Sbjct 14817 GAGGCAACCG--GCAAGGCGCTTCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCA 14760
Query 218015 TGGGTCTTCAGGTTGGAAAGACTTACA 218041
|||| | ||| || ||||| ||||
Sbjct 14759 TGGGCTTGCAGCAGGGCAAGACGTACA 14733
>seq90
Length=304869
Score = 96.9 bits (106), Expect = 7e-15
Identities = 111/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Minus
Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238
|| || || || ||||| ||||| ||| | ||||| | ||||||||||||| | ||
Sbjct 170547 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGTTGTTGACTGGCGAGACGCTCCCC 170488
Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297
||| ||| ||| |||||| || ||| | || || ||||||||||| ||||||||
Sbjct 170487 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGTATCGCTTACGTCGCCCAGCACGC 170429
Query 280298 TTTCCACCACATCGAGAACCACCTGGA 280324
||||||||||||||| | ||||| ||
Sbjct 170428 CTTCCACCACATCGAGCAGCACCTCGA 170402
>seq145
Length=5427
Score = 87.8 bits (96), Expect = 4e-12
Identities = 177/260 (68%), Gaps = 2/260 (1%)
Strand=Plus/Minus
Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174
||||| ||| |||| || || || || || || | |||||| || || |||| ||
Sbjct 5413 CTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGA 5354
Query 293175 GATCTCCCACGATGTCTTGTACACTGC-CTTGACATCAGGATGAATGCCAATAACCTTCT 293233
|||||||||| |||||||| | ||| ||||| ||| | | || || || ||||
Sbjct 5353 GATCTCCCACACCGTCTTGTAGA-TGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCT 5295
Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAG 293293
|||| || || || || || ||| ||||||||| | ||| ||| || ||
Sbjct 5294 GGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGT 5235
Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353
| | ||| ||||||| || | | |||||| || ||||||| || ||||| || |
Sbjct 5234 CGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACGGC 5175
Query 293354 GGCTGTAAATGTTCGAAGTG 293373
|| |||| ||||| || |||
Sbjct 5174 GGGTGTAGATGTTGGACGTG 5155
>seq216
Length=137410
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636
||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| ||||
Sbjct 25097 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 25156
Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696
| | || || || || | | ||||| || || ||||| | ||||||| ||| ||
Sbjct 25157 GTCGTTCCCGAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 25216
Query 251697 TTCAGAGTTCATGCCAATCA 251716
| ||||||||| ||||
Sbjct 25217 GGTGGCGTTCATGCCGATCA 25236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027833573556045
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |