Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq189 120 6e-22 seq236 114 3e-20 seq197 114 3e-20 seq173 114 3e-20 seq61 114 3e-20 seq57 114 3e-20 seq180 109 1e-18 seq198 98.7 2e-15 seq90 96.9 7e-15 seq145 87.8 4e-12 seq216 86.0 1e-11 >seq189 Length=636660 Score = 120 bits (132), Expect = 6e-22 Identities = 86/97 (89%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 103467 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 103408 Query 142563 CCCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCG 142599 |||||||| |||| || |||| | ||||| ||||| Sbjct 103407 CCCCACATTGGGC-GACTTCGC--TTTTTTGCTGGCG 103374 Score = 114 bits (126), Expect = 3e-20 Identities = 80/90 (89%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 142488 ACCGGGTGGTGAG--ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTA 142545 ||||| |||| | | |||||||||||||||||||||||||| | ||||||||||||| Sbjct 116481 ACCGGCTGGTCAAGCACAGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTG 116540 Query 142546 GTGGTCGTGGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||||||||||||| |||| Sbjct 116541 GTGGTCGTGGGTTCGAGCCCCACATTGGGC 116570 >seq236 Length=218215 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 216088 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 216147 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 216148 CCCCACATTGGGC 216160 >seq197 Length=268270 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 89560 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 89619 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 89620 CCCCACATTGGGC 89632 >seq173 Length=350542 Score = 114 bits (126), Expect = 3e-20 Identities = 85/97 (88%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||| Sbjct 349979 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 350038 Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGATGGCGC 142600 ||||||| |||| || |||| | ||||| || ||| Sbjct 350039 CCCACATTGGGC-GACTTCGC--TTTTTTGCTGTCGC 350072 >seq61 Length=13991 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 8604 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 8545 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 8544 CCCCACATTGGGC 8532 >seq57 Length=416566 Score = 114 bits (126), Expect = 3e-20 Identities = 69/73 (95%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||| Sbjct 127426 AGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAG 127485 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 127486 CCCCACATTGGGC 127498 >seq180 Length=165537 Score = 109 bits (120), Expect = 1e-18 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 279699 GGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCG- 279757 ||||| || ||||| ||||||||||||||||| || ||| | |||||||| || || || Sbjct 78530 GGTTCGCTCTCGGGCGGTTGGAAGATGAAGCTCGCGCTCGCCCGCGCCATCCT-CTTCGA 78472 Query 279758 TGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTG 279817 ||||| |||| || || || ||||| ||||||||| ||||| |||||| ||||| Sbjct 78471 GGCCGACATCCTCCTCCTCGACGAGCCGACCAACCACTTGGACGTGCTCAACGTCGCCTG 78412 Query 279818 GCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTC 279877 ||| | | |||||| | || |||| | | || |||| ||||| |||||| Sbjct 78411 GCTCGAGAACTACCTCTGCTCGCTCAAGACTTGCACCTCGATCATCGTCTCGCACGACAG 78352 Query 279878 TGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCAC 279914 |||||||| | ||| ||| | | |||| | ||| Sbjct 78351 CGGCTTCCTCAACAACGTCTGCACCGACATCCTCCAC 78315 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/176 (73%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 280173 GTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACC 280232 ||| | ||||| || ||| | || ||||| || || |||| |||| | ||||||| Sbjct 77965 GTCCTCGGACCGAACGGTTCCGGCAAGTCGACGCTCGTCAAGCTCCTCGTCGCCGAGACC 77906 Query 280233 CAGGCCACTGAGGG--GTCCGTT-TGGAAGCATCCCAACATGCGGATGGCTTACGTCGCT 280289 || ||| |||| || | | |||||||| |||||| || || | |||||||| Sbjct 77905 GAGCCCAACAAGGGCGGTGAGGTCTGGAAGCACCCCAACTTGGTCATCGGCTACGTCGCC 77846 Query 280290 CAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACAT 280345 |||||||| |||||||||||||| ||||||| |||| ||| || ||| ||||| Sbjct 77845 CAGCACGCCTTCCACCACATCGACCACCACCTCGACAAGACCCCGCTCCAGTACAT 77790 Score = 93.3 bits (102), Expect = 9e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| ||||||||||| || || | ||||| || || ||| Sbjct 78878 GGCGAGGACCTGTGCAACTGCACGTTCTCGCTCGCGTACGGCGCCAAGATCCTCCTCAAC 78819 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 | || |||| | |||||||||| |||| || |||||| || | ||| ||| || Sbjct 78818 ACGGCCACCCTCCGCCTCAAGCGTGGACACCGCTACGGTCTCTGTGGACGCAACGGATCG 78759 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATT-TCCTAACGC 279523 || ||| || || |||||||| || | ||||||||| | || || || ||| | | Sbjct 78758 GGCAAGTCGACCCTCATGCGCGCGATCGACAACGGTCAGGTCGAGGGCTTCCCCTCGCCC 78699 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGAC 279563 | ||||| | || | || || ||||||||| ||||| Sbjct 78698 GAC-GAGGTCCGCACGTTCTACGTCGAGCACGACGTCGAC 78660 >seq198 Length=50111 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||||||||| ||||||||||| || |||| || | | ||||| ||| Sbjct 14937 TGCACGCTCATCCTGACCGAGGGAGACTCGGCCAAGGCGCTCGCCGTCTCGGGTCTCGCC 14878 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 || || ||||| || | || ||| ||||||| ||||| || ||||| |||||||| ||| Sbjct 14877 GTCGTCGGTCGCGACAACTACGGTGTCTTCCCGCTCCGCGGAAAGCTCCTCAACGTTCGC 14818 Query 217957 GATGCCTCGGTTTCAA-GCATTGCT-GCAAATGCAGAGATTGCCGCCATCAAGCAAATCC 218014 || || | | ||| || | || | || || ||||| || |||||||| ||| Sbjct 14817 GAGGCAACCG--GCAAGGCGCTTCTCGAGAACGCCGAGATCCAGGCGATCAAGCAGATCA 14760 Query 218015 TGGGTCTTCAGGTTGGAAAGACTTACA 218041 |||| | ||| || ||||| |||| Sbjct 14759 TGGGCTTGCAGCAGGGCAAGACGTACA 14733 >seq90 Length=304869 Score = 96.9 bits (106), Expect = 7e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || || || || ||||| ||||| ||| | ||||| | ||||||||||||| | || Sbjct 170547 GGCCCGAACGGCGCGGGCAAGTCGACCTTGATCAAGTTGTTGACTGGCGAGACGCTCCCC 170488 Query 280239 -ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGC 280297 ||| ||| ||| |||||| || ||| | || || ||||||||||| |||||||| Sbjct 170487 GACTC-GGGACGCGTCGAGAAGCACCCGAACCTCCGTATCGCTTACGTCGCCCAGCACGC 170429 Query 280298 TTTCCACCACATCGAGAACCACCTGGA 280324 ||||||||||||||| | ||||| || Sbjct 170428 CTTCCACCACATCGAGCAGCACCTCGA 170402 >seq145 Length=5427 Score = 87.8 bits (96), Expect = 4e-12 Identities = 177/260 (68%), Gaps = 2/260 (1%) Strand=Plus/Minus Query 293115 CTGCGTCTGATCGACAAAGGCACCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGA 293174 ||||| ||| |||| || || || || || || | |||||| || || |||| || Sbjct 5413 CTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGA 5354 Query 293175 GATCTCCCACGATGTCTTGTACACTGC-CTTGACATCAGGATGAATGCCAATAACCTTCT 293233 |||||||||| |||||||| | ||| ||||| ||| | | || || || |||| Sbjct 5353 GATCTCCCACACCGTCTTGTAGA-TGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCT 5295 Query 293234 GGATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGACCAAGTCCCACGAG 293293 |||| || || || || || ||| ||||||||| | ||| ||| || || Sbjct 5294 GGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGT 5235 Query 293294 CAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGAC 293353 | | ||| ||||||| || | | |||||| || ||||||| || ||||| || | Sbjct 5234 CGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACGGC 5175 Query 293354 GGCTGTAAATGTTCGAAGTG 293373 || |||| ||||| || ||| Sbjct 5174 GGGTGTAGATGTTGGACGTG 5155 >seq216 Length=137410 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 251577 CTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTT 251636 ||||||||||| ||||| | |||||| |||||||| ||||| |||||||||| |||| Sbjct 25097 CTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTACAGCTT 25156 Query 251637 GGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAG 251696 | | || || || || | | ||||| || || ||||| | ||||||| ||| || Sbjct 25157 GTCGTTCCCGAGCGCGACAAGCAATCGGTCCGCGACGAACTCGATGTACTGTCGCATGAG 25216 Query 251697 TTCAGAGTTCATGCCAATCA 251716 | ||||||||| |||| Sbjct 25217 GGTGGCGTTCATGCCGATCA 25236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833573556045