Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq186 179 7e-40
seq145 131 3e-25
seq156 127 4e-24
seq180 122 2e-22
seq236 98.7 2e-15
seq197 98.7 2e-15
seq189 98.7 2e-15
seq173 98.7 2e-15
seq61 98.7 2e-15
seq57 98.7 2e-15
seq216 96.9 6e-15
seq33 86.0 1e-11
>seq186
Length=108833
Score = 179 bits (198), Expect = 7e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|||||||| || |||| || | ||| || || ||||| || |||||||| ||||| ||
Sbjct 60722 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 60781
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||||||| ||||| || | | || |||||||| ||
Sbjct 60782 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 60841
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| |||||||| ||||| ||||| | || || ||
Sbjct 60842 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 60901
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || ||||||||||||||||| ||||||||
Sbjct 60902 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 60948
>seq145
Length=5427
Score = 131 bits (144), Expect = 3e-25
Identities = 222/322 (69%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 30920 CTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGA 30979
||| | |||||| | |||| |||||||| || | ||||| |||||| |||| ||
Sbjct 5413 CTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGA 5354
Query 30980 CAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTG 31039
| |||||| | ||||||||||| |||||||||| |||| || ||| ||
Sbjct 5353 GATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTG 5294
Query 31040 GATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGC 31099
||| || || || || || ||| ||||||||| || ||| |||| ||| || |
Sbjct 5293 GATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTC 5234
Query 31100 GATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCG 31159
|| ||||||||| | ||| || |||||| || ||||||| || || ||| |||||
Sbjct 5233 GACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACGGCG 5174
Query 31160 GCTGTACAGATTAGAAGTGATCGGCTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGT 31219
| |||| | || || ||| |||||| | ||||| | | || ||| || |||
Sbjct 5173 GGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGT 5114
Query 31220 GGATGCGGTGGGCATCAGCGCG 31241
|| ||||| |||||| |||||
Sbjct 5113 CGACGCGGTCGGCATCGGCGCG 5092
>seq156
Length=1186
Score = 127 bits (140), Expect = 4e-24
Identities = 136/180 (76%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||| ||| ||||| ||||| || || |||||||| ||| |
Sbjct 199 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 258
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||| || || | |||||| |||||||| || | | || ||||| || |||
Sbjct 259 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 318
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| ||||||||| ||||||||||| | || || |||
Sbjct 319 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 378
>seq180
Length=165537
Score = 122 bits (134), Expect = 2e-22
Identities = 329/495 (66%), Gaps = 30/495 (6%)
Strand=Plus/Plus
Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573
|||||| || |||||| ||||||| |||||| || || ||||| || || ||||||||
Sbjct 78408 GAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGGATGTC 78467
Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633
|| || | |||||||||||| | ||| | |||||||| ||||| || || || || ||
Sbjct 78468 GGCCTCGAAGAGGATGGCGCGGGCGAGCGCGAGCTTCATCTTCCAACCGCCCGAGAGCGA 78527
Query 225634 GCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGT---ACTCCAGGAGCGTCTG 225687
||||| | | | | || ||| |||||| |||| |||| |||
Sbjct 78528 ACCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCGACCGACTCGAGGA-CGTTGC 78583
Query 225688 GATAATG-----CGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA 225742
| | | || || ||| | |||| | | ||| || || |||||| |
Sbjct 78584 GGCACTCGTCCTCGTTCTTGAG-GATGCGCTTGTCC---TTGAGGACGAACGAGATG--- 78636
Query 225743 TCATATACGGTCATGTCCGAGACAGACGC-GTCAATGTCGTGGTCCACGTACACCGTCCG 225801
|| || | ||||| | | ||| ||| | |||||| || ||||| | ||| ||
Sbjct 78637 ----ATCGAGT--TCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACGTGCG 78689
Query 225802 GAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGT 225861
|| || | |||||||||||| | ||| || || | ||||| || | |||||
Sbjct 78690 GACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGT 78749
Query 225862 ACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAG 225921
|||||||| |||||| | || ||| ||||| | | || ||||||| | |||
Sbjct 78750 CGACTTGCCCGATCCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGGCGGAG 78809
Query 225922 GCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAG 225981
| | | ||| |||||||||||| | || || || || |||||| ||| | ||||||
Sbjct 78810 GGTGGCCGTGTTGAGGAGGATCTTGGCGCCGTACGCGAGCGAGAACGTGCAGTTGCACAG 78869
Query 225982 GTCCTCACCCTCCTC 225996
|||||| ||||||||
Sbjct 78870 GTCCTCGCCCTCCTC 78884
>seq236
Length=218215
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 216089 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 216148
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 216149 CCCACATTGGGC 216160
>seq197
Length=268270
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 89561 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 89620
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 89621 CCCACATTGGGC 89632
>seq189
Length=636660
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 103466 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 103407
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 103406 CCCACATTGGGC 103395
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 116499 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 116558
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 116559 CCCACATTGGGC 116570
>seq173
Length=350542
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 349979 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 350038
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 350039 CCCACATTGGGC 350050
>seq61
Length=13991
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 8603 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 8544
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 8543 CCCACATTGGGC 8532
>seq57
Length=416566
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
||||||||||||||||||| ||||| | || ||||||| || ||||||||||||||||||
Sbjct 127427 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 127486
Query 84516 CCCACATCGGGC 84527
||||||| ||||
Sbjct 127487 CCCACATTGGGC 127498
>seq216
Length=137410
Score = 96.9 bits (106), Expect = 6e-15
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | |||||| ||||| || ||||||||||| ||
Sbjct 25092 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 25151
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098
||||| || ||||| || | || ||| ||||| || ||||||||||||||||| |
Sbjct 25152 AGCTTGTCGTTCCCGAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 25209
Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158
||| ||| | ||||||||| |||| || | ||| | |||||| | ||| || |
Sbjct 25210 GCATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTT 25269
Query 10159 TTTCGTTGGCGACCGCTTC 10177
||| | |||| |||||
Sbjct 25270 GCTCGATCTCGACGGCTTC 25288
>seq33
Length=99298
Score = 86.0 bits (94), Expect = 1e-11
Identities = 204/306 (67%), Gaps = 2/306 (1%)
Strand=Plus/Minus
Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040
|||| ||||||||| | || || | ||||| ||||| || |||||||| | |
Sbjct 51903 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 51844
Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTC 10100
||| || |||||||| | | | ||||| |||||||||||||||||||||| |
Sbjct 51843 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 51784
Query 10101 ATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTT 10160
|| ||||| ||||||||| || | | ||| | || ||| | ||| ||||
Sbjct 51783 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 51724
Query 10161 TCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG-GACAGCTTGTTCTC 10219
||| | ||||||| || | ||||| || ||| || || || || | |||
Sbjct 51723 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGC-GGCGCTC 51665
Query 10220 GAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAA 10279
||| | ||| | ||||| |||| | |||||| ||||||||||| |||||
Sbjct 51664 GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAG 51605
Query 10280 CTCGTT 10285
||||||
Sbjct 51604 CTCGTT 51599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921619577531400
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