Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq186 179 7e-40 seq145 131 3e-25 seq156 127 4e-24 seq180 122 2e-22 seq236 98.7 2e-15 seq197 98.7 2e-15 seq189 98.7 2e-15 seq173 98.7 2e-15 seq61 98.7 2e-15 seq57 98.7 2e-15 seq216 96.9 6e-15 seq33 86.0 1e-11 >seq186 Length=108833 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 |||||||| || |||| || | ||| || || ||||| || |||||||| ||||| || Sbjct 60722 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 60781 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | ||||||||| ||||| || | | || |||||||| || Sbjct 60782 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 60841 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| |||||||| ||||| ||||| | || || || Sbjct 60842 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 60901 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || ||||||||||||||||| |||||||| Sbjct 60902 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 60948 >seq145 Length=5427 Score = 131 bits (144), Expect = 3e-25 Identities = 222/322 (69%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 30920 CTGTGTCTGGTCAACAAACGGACCGCGGTCTGCTGCAAGGTCAATGACGGTCTTCATAGA 30979 ||| | |||||| | |||| |||||||| || | ||||| |||||| |||| || Sbjct 5413 CTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTGCGA 5354 Query 30980 CAGCTCCCATGCGGTCTTGTAGATTGCCTTGAGCTCAGGGTGGATGCCAATGACACGTTG 31039 | |||||| | ||||||||||| |||||||||| |||| || ||| || Sbjct 5353 GATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTTCTG 5294 Query 31040 GATGGACCCCCCGTTGGCAATAATCTGGTTCTTCATGGCCTCGGACCACGTGCCACGAGC 31099 ||| || || || || || ||| ||||||||| || ||| |||| ||| || | Sbjct 5293 GATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCGGTC 5234 Query 31100 GATGAGGTCGCGCACGAGGTAGTTGTTGACCACAGGGAACTCTCCAGCAAGGGTCCGGCG 31159 || ||||||||| | ||| || |||||| || ||||||| || || ||| ||||| Sbjct 5233 GACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACGGCG 5174 Query 31160 GCTGTACAGATTAGAAGTGATCGGCTCCATAGCCTCTACGGACCCGCAGATTTGCGCGGT 31219 | |||| | || || ||| |||||| | ||||| | | || ||| || ||| Sbjct 5173 GGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAAGGATCTGACTGGT 5114 Query 31220 GGATGCGGTGGGCATCAGCGCG 31241 || ||||| |||||| ||||| Sbjct 5113 CGACGCGGTCGGCATCGGCGCG 5092 >seq156 Length=1186 Score = 127 bits (140), Expect = 4e-24 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||| ||| ||||| ||||| || || |||||||| ||| | Sbjct 199 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 258 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||| || || | |||||| |||||||| || | | || ||||| || ||| Sbjct 259 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 318 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||| ||||||||||| | || || ||| Sbjct 319 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCCGACGACTCGACT 378 >seq180 Length=165537 Score = 122 bits (134), Expect = 2e-22 Identities = 329/495 (66%), Gaps = 30/495 (6%) Strand=Plus/Plus Query 225514 GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAGGATGTC 225573 |||||| || |||||| ||||||| |||||| || || ||||| || || |||||||| Sbjct 78408 GAGCCAGGCGACGTTGAGCACGTCCAAGTGGTTGGTCGGCTCGTCGAGGAGGAGGATGTC 78467 Query 225574 AGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGACAGGGA 225633 || || | |||||||||||| | ||| | |||||||| ||||| || || || || || Sbjct 78468 GGCCTCGAAGAGGATGGCGCGGGCGAGCGCGAGCTTCATCTTCCAACCGCCCGAGAGCGA 78527 Query 225634 GCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGT---ACTCCAGGAGCGTCTG 225687 ||||| | | | | || ||| |||||| |||| |||| ||| Sbjct 78528 ACCGATGG---CGGCCTCCTGGCGCTCGCGGGTGAAGCCGACCGACTCGAGGA-CGTTGC 78583 Query 225688 GATAATG-----CGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGGTAA 225742 | | | || || ||| | |||| | | ||| || || |||||| | Sbjct 78584 GGCACTCGTCCTCGTTCTTGAG-GATGCGCTTGTCC---TTGAGGACGAACGAGATG--- 78636 Query 225743 TCATATACGGTCATGTCCGAGACAGACGC-GTCAATGTCGTGGTCCACGTACACCGTCCG 225801 || || | ||||| | | ||| ||| | |||||| || ||||| | ||| || Sbjct 78637 ----ATCGAGT--TCTCCGACTC-GTCGCCGTCGACGTCGTGCTCGACGTAGAACGTGCG 78689 Query 225802 GAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGGGT 225861 || || | |||||||||||| | ||| || || | ||||| || | ||||| Sbjct 78690 GACCTCGTCGGGCGAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGT 78749 Query 225862 ACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTGAG 225921 |||||||| |||||| | || ||| ||||| | | || ||||||| | ||| Sbjct 78750 CGACTTGCCCGATCCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAGGCGGAG 78809 Query 225922 GCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCACAG 225981 | | | ||| |||||||||||| | || || || || |||||| ||| | |||||| Sbjct 78810 GGTGGCCGTGTTGAGGAGGATCTTGGCGCCGTACGCGAGCGAGAACGTGCAGTTGCACAG 78869 Query 225982 GTCCTCACCCTCCTC 225996 |||||| |||||||| Sbjct 78870 GTCCTCGCCCTCCTC 78884 >seq236 Length=218215 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 216089 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 216148 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 216149 CCCACATTGGGC 216160 >seq197 Length=268270 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 89561 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 89620 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 89621 CCCACATTGGGC 89632 >seq189 Length=636660 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 103466 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 103407 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 103406 CCCACATTGGGC 103395 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 116499 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 116558 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 116559 CCCACATTGGGC 116570 >seq173 Length=350542 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 349979 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 350038 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 350039 CCCACATTGGGC 350050 >seq61 Length=13991 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 8603 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 8544 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 8543 CCCACATTGGGC 8532 >seq57 Length=416566 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || |||||||||||||||||| Sbjct 127427 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTGGTCGTGGGTTCGAGC 127486 Query 84516 CCCACATCGGGC 84527 ||||||| |||| Sbjct 127487 CCCACATTGGGC 127498 >seq216 Length=137410 Score = 96.9 bits (106), Expect = 6e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | |||||| ||||| || ||||||||||| || Sbjct 25092 TTGGTCTTGCCCTCCATCGAGATCATCTCCATAAAGTCGAACGGGTTCTCGGCATTGTAC 25151 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAA--AATGCGGTCAGCCACGAACTCGATGTACTGGC 10098 ||||| || ||||| || | || ||| ||||| || ||||||||||||||||| | Sbjct 25152 AGCTTGTCGTTCCCGAGCGC-GACAAGCAAT-CGGTCCGCGACGAACTCGATGTACTGTC 25209 Query 10099 TCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCT 10158 ||| ||| | ||||||||| |||| || | ||| | |||||| | ||| || | Sbjct 25210 GCATGAGGGTGGCGTTCATGCCGATCAAGCCGACGGGCAAGGCGTCCGTCAGGAATTCTT 25269 Query 10159 TTTCGTTGGCGACCGCTTC 10177 ||| | |||| ||||| Sbjct 25270 GCTCGATCTCGACGGCTTC 25288 >seq33 Length=99298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 204/306 (67%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 9981 TTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAAC 10040 |||| ||||||||| | || || | ||||| ||||| || |||||||| | | Sbjct 51903 TTGGTCTTGCCCTCCATCGAGATCATGTCCATAAAGTCGAACGGGTTCTCCTTGTGGTAG 51844 Query 10041 TGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTC 10100 ||| || |||||||| | | | ||||| |||||||||||||||||||||| | Sbjct 51843 ATCTTCTCGTTGCCGAGTGCGATAAGCAATCGGTCTGCCACGAACTCGATGTACTGGCAC 51784 Query 10101 ATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTT 10160 || ||||| ||||||||| || | | ||| | || ||| | ||| |||| Sbjct 51783 ATGAGGTCGCTGTTCATGCCGATAAGCTTGACGGGCAGCGCCTCGGTGAGGAACTCCTGC 51724 Query 10161 TCGTTGGCGACCGCTTCCTCGACGATGCTCTTTACCACGTCAAGG-GACAGCTTGTTCTC 10219 ||| | ||||||| || | ||||| || ||| || || || || | ||| Sbjct 51723 TCGATCTCGACCGCCTCGCGAATGATGCGCTCGACCGTTTCGGGGTGAGGGC-GGCGCTC 51665 Query 10220 GAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAA 10279 ||| | ||| | ||||| |||| | |||||| ||||||||||| ||||| Sbjct 51664 GAGGTGCGAGAAGAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCGCGCGAGATGAG 51605 Query 10280 CTCGTT 10285 |||||| Sbjct 51604 CTCGTT 51599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619577531400