Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq145 280 3e-70 seq33 161 2e-34 seq216 111 3e-19 >seq145 Length=5427 Score = 280 bits (310), Expect = 3e-70 Identities = 555/811 (68%), Gaps = 14/811 (2%) Strand=Plus/Minus Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851 |||| |||||||||||||||||||||||| || ||||||| |||||| |||||| Sbjct 4378 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAT 4319 Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910 | || |||||| | | || | || | || | | | ||||| ||| || Sbjct 4318 GGCGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCATACT 4260 Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970 | |||| ||| ||||||| ||| ||||||||| |||||||| | || | Sbjct 4259 TCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAG 4200 Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030 |||| | ||| ||| |||||| | || ||| | || ||||||||||||||| |||| Sbjct 4199 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCC 4140 Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090 ||||||| ||| | ||| | | | ||| ||| ||| |||||| | || | Sbjct 4139 AGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 4080 Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150 | | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || | Sbjct 4079 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 4020 Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210 |||||||||| |||||||| || | | || |||| | | ||| || | || | Sbjct 4019 GCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGA 3960 Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270 |||||||| |||| |||||| ||||| |||||| | ||| | | | || |||| Sbjct 3959 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGT 3900 Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330 ||| || | || | |||||||| |||||||||||| ||||| |||||| |||| Sbjct 3899 GGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 3840 Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 | |||||||| || ||| |||||| ||| || ||||| || || ||||| | Sbjct 3839 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 3780 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450 | | || ||| | |||||| || || || |||||| |||||||| || ||| | Sbjct 3779 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACA 3720 Query 245451 GGAACCCGTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508 || |||||||| || | | ||| || |||| ||||||||||| ||| | ||| | Sbjct 3719 TGAGGTTGTACGTCTCGATC-GCGCGCTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 3663 Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564 | | |||||| ||||||| || |||| | || ||| | | ||||| || Sbjct 3662 CACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 3606 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595 | || ||||||||||||||||| || ||||| Sbjct 3605 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 3575 Score = 141 bits (156), Expect = 2e-28 Identities = 517/803 (64%), Gaps = 56/803 (7%) Strand=Plus/Minus Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933 || |||||| ||||| |||||||| ||| | | || || |||| | | ||||| Sbjct 5425 GACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGAC 5366 Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993 | ||||||| || ||||| || |||||||||||||| ||||||| | || |||| || Sbjct 5365 GACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACC 5306 Query 243994 TTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCA 244053 || |||||| | |||||| ||||| |||||| | | | ||| |||||||| Sbjct 5305 GGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCA 5246 Query 244054 CAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTTCACCACCTGAAACTCTCC 244110 |||||| ||| || | ||| ||| ||| ||| || || || ||||| || Sbjct 5245 CAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCC 5189 Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170 | || || ||||| ||||| |||| || |||||||| ||| || ||| Sbjct 5188 GGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCC 5129 Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG---ACACCAGCAGACTGTTCCTCAC 244227 || ||||| || ||| |||||||| |||| | || ||| || ||| | | Sbjct 5128 AAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAGC-GA--GTTGCGGAT 5072 Query 244228 GCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC-T 244286 ||||||| |||| | ||| ||| ||| | || | | || | |||||| | Sbjct 5071 GCCGTGC-------TGCGCAATCT--TCTCCTTCAACTCGGCCCAGTCCCACAGGTCCGT 5021 Query 244287 CGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGG---GCTGC--- 244340 || | ||| | ||||| ||| |||||| || || | ||| |||| || || Sbjct 5020 CG-GCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGGCGAGCCGCCGT 4962 Query 244341 ---CCTCGTAGGTCGGGTA------GGGACCGTCGCGCTGGGCCA--GCTTA-------- 244381 ||| ||| | ||||| ||| || || | ||||| | || || Sbjct 4961 TCTCCTTGTACGAGGGGTACCAGCCGGGCTCGCCGGGGTGGGCGATGGCGTAGTCGCGGG 4902 Query 244382 -CAGCTCTC-------GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCA 244433 || || | |||| ||||||| |||||| |||||||||||| ||| | Sbjct 4901 CCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATCGTCTCGAAGATCTGGACGTTGA 4842 Query 244434 TGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTC 244493 || ||| |||| | || ||| || | | | ||||||| ||||||| || | Sbjct 4841 GGTGGCGCGCCTCGGGCGAGTCGAACGGCAGACGGAGGGCCATGAAGGCGTCGGCGAGAC 4782 Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGG 244553 ||||||| ||||| ||||| || | ||| || |||| |||| ||| || |||| Sbjct 4781 CCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCGCTCGGCCTCCTTGACGG 4722 Query 244554 GGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGG 244613 |||| ||||| ||||||| | ||| | |||| |||| | |||||||||| Sbjct 4721 GGTAGTAGTTGACGTCGATGATGCGGTTCAAGTTGTACGTGACGACCTTGACGACGTCGT 4662 Query 244614 CCAGCAGCTGAAAGTCGTACTCG 244636 |||| || |||||||||||| Sbjct 4661 GCAGCTTCTTGAAGTCGTACTCG 4639 >seq33 Length=99298 Score = 161 bits (178), Expect = 2e-34 Identities = 226/311 (73%), Gaps = 7/311 (2%) Strand=Plus/Plus Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865 |||||| |||||| | |||||||| || || | ||||||||||||||||| ||||| Sbjct 51598 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 51657 Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924 | |||||| || | |||||| || |||| | |||||| ||||| | Sbjct 51658 G---CACCTCGAGCGCC-GCCCTCACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGG 51713 Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984 | ||||||||| ||||||||||||| || |||||||||| || ||||||||||| Sbjct 51714 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACA 51773 Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGGGT 43043 ||||||||||||| |||||||| ||| ||| || |||| || | | | || || Sbjct 51774 GCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCA 51833 Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103 || | ||||| ||| | | ||| |||||||||||||| | |||||| ||||| Sbjct 51834 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 51892 Query 43104 GGCAAGACCAA 43114 ||||||||||| Sbjct 51893 GGCAAGACCAA 51903 Score = 152 bits (168), Expect = 1e-31 Identities = 141/175 (81%), Gaps = 4/175 (2%) Strand=Plus/Plus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||||| || |||||||||| |||||| | | | | ||| || Sbjct 51327 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCG-GACGAG-CGCTCCG 51384 Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | |||||||| | || || || || ||||||||||||||||||||||||| ||| | | Sbjct 51385 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 51444 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805 |||| |||||||||||||||||| || | | ||||||||||||||||||||| Sbjct 51445 TCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 51499 >seq216 Length=137410 Score = 111 bits (122), Expect = 3e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692 ||||||||| |||||||| || |||||||| |||||| | || | ||| Sbjct 25628 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTC 25569 Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752 || | || | ||||| || || |||| |||||||||||||||||||| ||| | ||| Sbjct 25568 TTTGCGGAACGACTGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 25509 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 ||||| ||||||||||||||| || || | ||||||||| | || |||||| Sbjct 25508 GCCTCGATCTTCTGGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTCTCG 25455 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||||||||| |||||||| || || |||||| ||| |||||| | Sbjct 25952 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGGTTCTCG 25893 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529 ||||||||| | ||||| ||||| |||||||| |||||||| Sbjct 25892 GCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 25846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336307961200