Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq145 280 3e-70
seq33 161 2e-34
seq216 111 3e-19
>seq145
Length=5427
Score = 280 bits (310), Expect = 3e-70
Identities = 555/811 (68%), Gaps = 14/811 (2%)
Strand=Plus/Minus
Query 244792 GTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGAC 244851
|||| |||||||||||||||||||||||| || ||||||| |||||| ||||||
Sbjct 4378 GTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGAT 4319
Query 244852 GCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTG-CCCTCTGCCTCGTAGC 244910
| || |||||| | | || | || | || | | | ||||| ||| ||
Sbjct 4318 GGCGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCATACT 4260
Query 244911 GGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCG 244970
| |||| ||| ||||||| ||| ||||||||| |||||||| | || |
Sbjct 4259 TCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAG 4200
Query 244971 GGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCC 245030
|||| | ||| ||| |||||| | || ||| | || ||||||||||||||| ||||
Sbjct 4199 GGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCC 4140
Query 245031 AGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCT 245090
||||||| ||| | ||| | | | ||| ||| ||| |||||| | || |
Sbjct 4139 AGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGT 4080
Query 245091 CCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCC 245150
| | || || |||| |||| ||||||| ||||| | ||||| |||| ||||| || |
Sbjct 4079 CGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGC 4020
Query 245151 GCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCA 245210
|||||||||| |||||||| || | | || |||| | | ||| || | || |
Sbjct 4019 GCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGA 3960
Query 245211 CTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGC 245270
|||||||| |||| |||||| ||||| |||||| | ||| | | | || ||||
Sbjct 3959 TGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGT 3900
Query 245271 TGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGT 245330
||| || | || | |||||||| |||||||||||| ||||| |||||| ||||
Sbjct 3899 GGATCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGT 3840
Query 245331 CTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390
| |||||||| || ||| |||||| ||| || ||||| || || ||||| |
Sbjct 3839 CGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCG 3780
Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450
| | || ||| | |||||| || || || |||||| |||||||| || ||| |
Sbjct 3779 GGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACA 3720
Query 245451 GGAACCCGTACGTCTGGAGCAGAGCG-TCGATGTTGTCGCCGTGGATCTGCAGGGCGC-A 245508
|| |||||||| || | | ||| || |||| ||||||||||| ||| | ||| |
Sbjct 3719 TGAGGTTGTACGTCTCGATC-GCGCGCTCAATGTCGTCGCCGTGGA--TGCCGACCGCGA 3663
Query 245509 C-CTCATGAGGGTGTGCTGGGGCGTCTCG---ATGGGTCCCTCGGGTCCCTTGAGCATGT 245564
| | |||||| ||||||| || |||| | || ||| | | ||||| ||
Sbjct 3662 CACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGC---GGAGCAGGT 3606
Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAGTA 245595
| || ||||||||||||||||| || |||||
Sbjct 3605 ACGACCGCTCGAGCGTCTTGAAGCCGAAGTA 3575
Score = 141 bits (156), Expect = 2e-28
Identities = 517/803 (64%), Gaps = 56/803 (7%)
Strand=Plus/Minus
Query 243874 GAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCGGCCATGGTGATGAG 243933
|| |||||| ||||| |||||||| ||| | | || || |||| | | |||||
Sbjct 5425 GACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGAC 5366
Query 243934 GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGGGAACCC 243993
| ||||||| || ||||| || |||||||||||||| ||||||| | || |||| ||
Sbjct 5365 GACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACC 5306
Query 243994 TTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCA 244053
|| |||||| | |||||| ||||| |||||| | | | ||| ||||||||
Sbjct 5305 GGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCA 5246
Query 244054 CAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCC---TGTTCACCACCTGAAACTCTCC 244110
|||||| ||| || | ||| ||| ||| ||| || || || ||||| ||
Sbjct 5245 CAGGCC---GCGGTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCC 5189
Query 244111 CGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCC 244170
| || || ||||| ||||| |||| || |||||||| ||| || |||
Sbjct 5188 GGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCC 5129
Query 244171 CAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCG---ACACCAGCAGACTGTTCCTCAC 244227
|| ||||| || ||| |||||||| |||| | || ||| || ||| | |
Sbjct 5128 AAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAGC-GA--GTTGCGGAT 5072
Query 244228 GCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCC-T 244286
||||||| |||| | ||| ||| ||| | || | | || | |||||| |
Sbjct 5071 GCCGTGC-------TGCGCAATCT--TCTCCTTCAACTCGGCCCAGTCCCACAGGTCCGT 5021
Query 244287 CGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGG---GCTGC--- 244340
|| | ||| | ||||| ||| |||||| || || | ||| |||| || ||
Sbjct 5020 CG-GCGTGACGTTCCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGGCGAGCCGCCGT 4962
Query 244341 ---CCTCGTAGGTCGGGTA------GGGACCGTCGCGCTGGGCCA--GCTTA-------- 244381
||| ||| | ||||| ||| || || | ||||| | || ||
Sbjct 4961 TCTCCTTGTACGAGGGGTACCAGCCGGGCTCGCCGGGGTGGGCGATGGCGTAGTCGCGGG 4902
Query 244382 -CAGCTCTC-------GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCA 244433
|| || | |||| ||||||| |||||| |||||||||||| ||| |
Sbjct 4901 CCATGTCGCACGACGACTCGATCGCGGCGTGGTAGATCGTCTCGAAGATCTGGACGTTGA 4842
Query 244434 TGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTC 244493
|| ||| |||| | || ||| || | | | ||||||| ||||||| || |
Sbjct 4841 GGTGGCGCGCCTCGGGCGAGTCGAACGGCAGACGGAGGGCCATGAAGGCGTCGGCGAGAC 4782
Query 244494 CCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGG 244553
||||||| ||||| ||||| || | ||| || |||| |||| ||| || ||||
Sbjct 4781 CCTGCACACCGATACCGATCGGGCGGTGGCGGAAGTTGCTGCGCTCGGCCTCCTTGACGG 4722
Query 244554 GGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGG 244613
|||| ||||| ||||||| | ||| | |||| |||| | ||||||||||
Sbjct 4721 GGTAGTAGTTGACGTCGATGATGCGGTTCAAGTTGTACGTGACGACCTTGACGACGTCGT 4662
Query 244614 CCAGCAGCTGAAAGTCGTACTCG 244636
|||| || ||||||||||||
Sbjct 4661 GCAGCTTCTTGAAGTCGTACTCG 4639
>seq33
Length=99298
Score = 161 bits (178), Expect = 2e-34
Identities = 226/311 (73%), Gaps = 7/311 (2%)
Strand=Plus/Plus
Query 42806 GAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTC 42865
|||||| |||||| | |||||||| || || | ||||||||||||||||| |||||
Sbjct 51598 GAACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC 51657
Query 42866 GAGCCACCTCAGGCACAAGCCCTCGAAG-GAGCGGGTCCGGGCCATCATCACGGAGGCCG 42924
| |||||| || | |||||| || |||| | |||||| ||||| |
Sbjct 51658 G---CACCTCGAGCGCC-GCCCTCACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGG 51713
Query 42925 TGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACC 42984
| ||||||||| ||||||||||||| || |||||||||| || |||||||||||
Sbjct 51714 TCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACA 51773
Query 42985 ACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACC-ATCTCCTGTGCCAGATGGGT 43043
||||||||||||| |||||||| ||| ||| || |||| || | | | || ||
Sbjct 51774 GCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCACTCGGCA 51833
Query 43044 CTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAG 43103
|| | ||||| ||| | | ||| |||||||||||||| | |||||| |||||
Sbjct 51834 ACGAGAAG-ATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGAG 51892
Query 43104 GGCAAGACCAA 43114
|||||||||||
Sbjct 51893 GGCAAGACCAA 51903
Score = 152 bits (168), Expect = 1e-31
Identities = 141/175 (81%), Gaps = 4/175 (2%)
Strand=Plus/Plus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||||||| |||||||||| || |||||||||| |||||| | | | | ||| ||
Sbjct 51327 CCCTGCATCCAGAAGAAGGCCGAGTGGGCGCTCACTTGGATCTCG-GACGAG-CGCTCCG 51384
Query 42693 T--TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750
| |||||||| | || || || || ||||||||||||||||||||||||| ||| | |
Sbjct 51385 TCTTCGGCGAGCGCCTCGTCGCGTTCGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCGT 51444
Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTC 42805
|||| |||||||||||||||||| || | | |||||||||||||||||||||
Sbjct 51445 TCGCGTCCATCTTCTGGCTCAAGAAGCGCGGCTTGATGCCCGGACTCACCTTCTC 51499
>seq216
Length=137410
Score = 111 bits (122), Expect = 3e-19
Identities = 129/174 (74%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACG 42692
||||||||| |||||||| || |||||||| |||||| | || | |||
Sbjct 25628 CCCTGCATCGCCAAGAAGGCCGAGTGGGCGCTTCGATGGATCTCGGACCCTGGCGCCGTC 25569
Query 42693 TTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTC 42752
|| | || | ||||| || || |||| |||||||||||||||||||| ||| | |||
Sbjct 25568 TTTGCGGAACGACTGGTCGCTTTCGCCGCTGTCGAGGGCATCTTCTTCTCCGGCTCGTTC 25509
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCG 42806
||||| ||||||||||||||| || || | ||||||||| | || ||||||
Sbjct 25508 GCCTCGATCTTCTGGCTCAAGAAGCGGGGCTTGATGCCCGGTTTGACGTTCTCG 25455
Score = 86.0 bits (94), Expect = 1e-11
Identities = 83/107 (78%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482
|| ||||||||||||||||| |||||||| || || |||||| ||| |||||| |
Sbjct 25952 CTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGGTTCTCG 25893
Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGAT 42529
||||||||| | ||||| ||||| |||||||| ||||||||
Sbjct 25892 GCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 25846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944336307961200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |