Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq216 95.1 3e-14 seq198 91.5 3e-13 seq180 87.8 4e-12 >seq216 Length=137410 Score = 95.1 bits (104), Expect = 3e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 |||| || || ||| | ||||| || || | ||| | |||||| | ||||| | Sbjct 25306 GTCACCCAGATTATCGCCGAAGCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTG 25247 Query 243553 CCATGCCGGCTT-ATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGC 243611 || | |||||| || ||||||||| | |||||| ||||||||||||| ||||| || Sbjct 25246 CCC-GTCGGCTTGATCGGCATGAACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGC 25188 Query 243612 CGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGC 243671 ||||| | | ||||||| || | || || ||||||| || ||||||| || | Sbjct 25187 GGACCGATTGCTTGTCGCGCTCGGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGA 25128 Query 243672 CTTTATGGAGCTCATTTCG 243690 |||||||||| | || ||| Sbjct 25127 CTTTATGGAGATGATCTCG 25109 >seq198 Length=50111 Score = 91.5 bits (100), Expect = 3e-13 Identities = 182/267 (68%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 298198 GTCGGTCATGATCATCACATGACCGTAACGAAGCGAGGACGTGTCTTTGTACACTTTACC 298257 ||||| ||||||||||| ||||| || |||||| ||| ||||| || || Sbjct 14686 GTCGGCCATGATCATCAGGCTGCCGTAGCGGAGCGAGTCGGTGCTCGTGTACGTCTTGCC 14745 Query 298258 GGTTTGAAGGCCGAGAATTTGTTTGAGCGCTGTGATTTCTTCGTTCTTCGTGATGC---T 298314 || | ||| | || || |||| ||| ||| || |||||| || || || | Sbjct 14746 CTGCTGCAAGCCCATGATCTGCTTGATCGCCTGGATCTCGGCGTTCT-CGAGAAGCGCCT 14804 Query 298315 TGCCACGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCT 298374 |||| || ||| ||||| || || | || ||||| || || ||||| || || || | Sbjct 14805 TGCC--GGTTGCCTCGCGAACGTTGAGGAGCTTTCCGCGGAGCGGGAAGACACCGTAGTT 14862 Query 298375 CTCGCGACCGACCACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGT 298434 ||||||||||| |||| || || | || || || | | || || || ||||| || Sbjct 14863 GTCGCGACCGACGACGGCGAGACCCGAGACGGCGAGCGCCTTGGCCGAGTCTCCCTCGGT 14922 Query 298435 CAGAATGAGAGTGCACATTTTGCTGTT 298461 ||| ||||| |||||| | |||| ||| Sbjct 14923 CAGGATGAGCGTGCACTTGTTGCCGTT 14949 >seq180 Length=165537 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 334179 GAGGGGAACCCTTCAAGCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCC 334238 |||||||| || || | ||||||||| | || |||||||| || || || || |||| Sbjct 78703 GAGGGGAAGCCCTCGACCTGACCGTTGTCGATCGCGCGCATGAGGGTCGACTTGCCCGAT 78762 Query 334239 CCGTTTGGCCCACACAGACCGTAGCGGTTTCCACGCTTCAG 334279 ||||| | ||||| ||||||||||||| ||||||||| || Sbjct 78763 CCGTTGCGTCCACAGAGACCGTAGCGGTGTCCACGCTTGAG 78803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876537990750