Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq145 176 5e-39
seq236 100 3e-16
>seq145
Length=5427
Score = 176 bits (194), Expect = 5e-39
Identities = 489/739 (66%), Gaps = 17/739 (2%)
Strand=Plus/Minus
Query 114590 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 114649
|| |||||||| |||||| | || | |||||||| |||| || ||| || || | |
Sbjct 4371 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 4312
Query 114650 CAGA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 114708
|||| | || | ||| || | ||| ||||| || ||||||| ||| ||||| | |
Sbjct 4311 CAGAGCTTCTG-GGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 4253
Query 114709 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 114768
|| | | ||||| || || | |||| ||| || ||||||| | ||||||||
Sbjct 4252 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 4193
Query 114769 GAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGC 114828
||| | ||| | || || ||| ||||||| |||||||||||| || |||||||| ||
Sbjct 4192 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 4133
Query 114829 TGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 114888
|||| | || || ||| | || || | || || || || | || | ||
Sbjct 4132 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 4073
Query 114889 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACG 114945
|| | ||| || ||||||||||| || ||||| | |||| | ||| ||
Sbjct 4072 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 4013
Query 114946 ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACC 115005
|| |||||| || || | ||| ||| || | ||||| ||||| || ||||| ||
Sbjct 4012 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 3953
Query 115006 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATG 115063
| || | ||| || || || ||| |||||| | | || | || | |||||
Sbjct 3952 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATGTTGTGGATC 3895
Query 115064 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 115123
| ||| || || || ||| ||| ||||| |||||||| | |||| || |||||
Sbjct 3894 GAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 3835
Query 115124 ATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTT 115183
|| || ||||||||||| |||| | | || |||||||| ||| | || ||
Sbjct 3834 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 3775
Query 115184 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 115242
|| || || ||||||||||| || || | ||||| | || |||| | |||||
Sbjct 3774 GGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTACCGCTCCGACATGAG 3716
Query 115243 ATCGTAGGTCTCCAAGACGGCGGG---AATGTCTTCCCCGTGAATACCGATCGAGACCCG 115299
| ||| ||||| || ||| | |||||| || ||||| || |||| || ||| ||
Sbjct 3715 GTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACG 3659
Query 115300 CATAAACATGTATTGGGGT 115318
||| | ||||| || |||
Sbjct 3658 CATGAGCATGTGCTGCGGT 3640
>seq236
Length=218215
Score = 100 bits (110), Expect = 3e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 8796 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 8855
|| |||||| |||| || | |||||||||||||| |||||||| || | |||||||
Sbjct 157970 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGCGACTATGTCGAGGGCATGTGG 158029
Query 8856 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 8915
| | | || || || || || | ||||| | |||| ||||||| || ||||| ||| ||
Sbjct 158030 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACCGGCGAGACCCACCCC 158089
Query 8916 GTCAGGGAGTTCGTTGAG 8933
||| | |||||||| |||
Sbjct 158090 GTCCGCGAGTTCGTCGAG 158107
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597351770604600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |