Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq186 111 2e-19
seq217 91.5 2e-13
seq33 89.7 6e-13
>seq186
Length=108833
Score = 111 bits (122), Expect = 2e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || |||||||| | ||||| || | || || |||||||| || |||||
Sbjct 60757 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAA 60816
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| | ||||||||||||| || | || |||||||||| ||| | || | ||||
Sbjct 60817 GATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGACAT 60875
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | |||||| ||| || || |||| |||||||| ||||| || || ||||| |
Sbjct 60876 TGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 60935
Query 42196 CAAAGATTTGCAT 42208
| ||||| |||||
Sbjct 60936 CGAAGATCTGCAT 60948
Score = 89.7 bits (98), Expect = 6e-13
Identities = 117/157 (75%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077
||||||||||| |||||||| || || || |||| || |||||||| || |||||
Sbjct 59875 TCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAG 59934
Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136
|| | ||||||||||||| || | || |||||||||| ||| | || | |||| |||
Sbjct 59935 ATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGT 59992
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | | ||||||| ||| || || |||| |||||
Sbjct 59993 TGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGAT 60029
Score = 82.4 bits (90), Expect = 8e-11
Identities = 116/158 (73%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
||| || || || |||||||| | ||||| || |||| || |||||||| || |||||
Sbjct 60174 CTCTTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAA 60233
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| | ||||||||||||| || | || |||||||||| ||| | || | |||| ||
Sbjct 60234 GATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTGA-CG 60291
Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | | | |||||| ||| || || |||| |||||
Sbjct 60292 TTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 60329
>seq217
Length=194401
Score = 91.5 bits (100), Expect = 2e-13
Identities = 116/157 (74%), Gaps = 2/157 (1%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||| ||||| |||| ||||| || |||| || |||||||| || || ||
Sbjct 61181 CTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 61122
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| | || | || |||||||||| ||| || |||| |||
Sbjct 61121 GATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 61063
Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
| | | |||||| ||| || || |||| |||||
Sbjct 61062 TGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGAT 61026
>seq33
Length=99298
Score = 89.7 bits (98), Expect = 6e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||| | | ||||| ||| | || | || ||| || || || |||||||| |
Sbjct 193 ACCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGA 252
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || |||| || |||||||| || ||||| ||||| ||||||||||||| ||
Sbjct 253 AAGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 312
Query 42101 CACGCTCTCCTTGTCCATGATTTT 42124
| || |||||||||| ||| ||
Sbjct 313 GATGCCCTCCTTGTCCTGGATCTT 336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543211136410800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |