Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq145 241 1e-58 >seq145 Length=5427 Score = 241 bits (266), Expect = 1e-58 Identities = 423/615 (69%), Gaps = 6/615 (1%) Strand=Plus/Plus Query 93724 TACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTTTCC 93783 ||||| | |||||| || || ||| ||||||||| ||| | || |||| ||| || Sbjct 3575 TACTTCGGCTTCAAGACGCTCGAGCGGTCGTACCTGCTCCGCCTCGACGGCAAGGTGGCC 3634 Query 93784 GAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATGCCG 93843 ||||||||||| || |||| ||||| ||||| |||| || |||||| ||||||| | Sbjct 3635 GAGCGACCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAG 3694 Query 93844 AATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTA---TACCATGGCCACCCCG 93900 | | | | | || |||| ||| | |||| ||| ||| | ||| Sbjct 3695 CGCGCGATCGAGACGTACAACCTCATGTCGGA---GCGGTACTTTACGCACGCCTCGCCG 3751 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 || || |||||||| || || ||| || ||| | || ||||| ||||| | |||| Sbjct 3752 ACGCTCTTCAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATG 3811 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 |||| |||||| ||| || || | ||||| |||||| || ||| |||||| || Sbjct 3812 AAGGACGACTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAG 3871 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 || || || ||||| || ||||| || | || || | || || |||||| | Sbjct 3872 ACGGCCGGCGGCATCGGTCTCTCGATCCACAACATCCGCGCGACCGGCTCGTACATCGCC 3931 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 || || || ||| ||| |||||| || |||| |||||||| || | ||||||| | ||| Sbjct 3932 GGCACGAACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCG 3991 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 |||||||| |||||||| || | | | ||| | ||||| |||| |||||||| Sbjct 3992 CGCTACGTCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCG 4051 Query 94201 TGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAG 94260 |||||||| ||| | | ||| ||||||| || |||||||||||||| || || Sbjct 4052 TGGCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTC 4111 Query 94261 AGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 | || | ||| | |||| || |||||| | || ||||| || ||| | || |||||| Sbjct 4112 CGCGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAG 4171 Query 94321 AAAAACTCCGCCTGG 94335 | ||| || |||| Sbjct 4172 CAGAACGGCGACTGG 4186 Score = 138 bits (152), Expect = 1e-27 Identities = 226/318 (71%), Gaps = 6/318 (2%) Strand=Plus/Plus Query 95104 GCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCC 95163 || || ||||| || || || || |||||||||||| ||||||| ||||||| || Sbjct 5093 GCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTTGGCTTCAACGAGGCGTTCGAGCCG 5152 Query 95164 TTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAG 95223 | ||| |||||| | |||| | | || || |||||||| || |||| ||| ||||| Sbjct 5153 TACACGTCCAACATCTACACCCGCCGTGTCCTCGCCGGCGAGTTCCAAGTCGTCAACCCC 5212 Query 95224 CACCTCCTACGGGACCT-GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACT 95282 ||||| || ||||| | || | | || ||||| ||| | | ||||| || Sbjct 5213 TGGCTCCTCCGCGACCTCGTCGAC-CGCGGCCTGTGGAACGACGCGATGAAGAA-CACGA 5270 Query 95283 GCTACGCGC-CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGC 95341 | ||||| ||||||||| |||||||| |||| || || || || |||| |||| Sbjct 5271 TCATCGCGCACAACGGCTCGATCCAGAACGTCCCCGGTATCCCTGATGAGCTCAA-GCGC 5329 Query 95342 -TCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGC 95400 |||||||||| |||||||||||| ||||| || | |||||| | | |||| |||| Sbjct 5330 ATCTACAAGACGGTGTGGGAGATCTCGCAGAAGGTCGTCATCGACCTCTCCGCCGACCGC 5389 Query 95401 GGGCCCTTCATCTGCCAG 95418 || | |||||| |||| Sbjct 5390 GGAGCGTTCATCGACCAG 5407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494721684910200