Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq145 116 4e-21 seq33 100 3e-16 >seq145 Length=5427 Score = 116 bits (128), Expect = 4e-21 Identities = 434/662 (66%), Gaps = 25/662 (4%) Strand=Plus/Minus Query 153809 GCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGC 153868 ||| ||||| |||| || |||| |||| || ||||||||||||||| ||| Sbjct 4279 GCGACCCTCCTTCTCATACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTG 4220 Query 153869 GAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGT-CGGCGTTGACGCGTC 153927 ||||||||| || || || | || | ||| ||| | || | ||| || Sbjct 4219 GAGGCCGGGTGCCTCGGCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGC-TCGACACGCT 4161 Query 153928 GCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAATCCTCCG 153987 |||||| || || || | |||||| || | | | ||||||||| | |||||| Sbjct 4160 CCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCT 4101 Query 153988 CGCCCATGTTGCGTTTCAGA--TTGAGCA-CGCTATAGATGTCGGCGTGCCAGGGTTCAA 154044 ||| ||| || | || | ||| | | | | |||||||||||||||| || || | Sbjct 4100 TGCCGTGGTTC--TTGCGGAGGTCGAGGAACTCGA-AGATGTCGGCGTGCCACGGCTCGA 4044 Query 154045 TGTAGACGGCCAGGGCACCTTTACGCTTT---CCGCCCTGATCGACGTGGCGCACCATAT 154101 ||||| ||| | || || ||||| |||||||| ||||||| |||| | | | Sbjct 4043 GGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGT 3984 Query 154102 TGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCT 154161 ||||| | ||||| | |||||| | |||| | | | |||||| || ||| | Sbjct 3983 TGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGT 3924 Query 154162 TGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGCCG-CCGTACTTTGAT 154220 |||| ||||| | | || | | || ||||||||| |||| ||| || Sbjct 3923 ACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAG 3865 Query 154221 ATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCC 154279 ||| ||||| ||| ||||| ||||||||| ||||| ||||| | Sbjct 3864 ATGAGCGCGCACGTCTTG-AGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGT 3806 Query 154280 GAGCAAGAAACACGAACACATTTGCGGAATGCG-CGTTCCCGCCGAAAAGAGGGTGGGAC 154338 || | ||| ||||| | | ||||| |||| ||| || || ||||| || || Sbjct 3805 GACGAGGAAGCACGACGAGAGCTGCGGG-TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCG 3747 Query 154339 TCGCGTGCGTAAACAGTTTTTGGCTCAT-CATGCGGT---ACGTTTCGATGGCGTCTTCG 154394 ||||||||||| | |||| |||| ||| |||| ||||| ||| || Sbjct 3746 AGGCGTGCGTAAAG----TACCGCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCA 3691 Query 154395 ATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTCGGCG 154454 || || |||||||| ||||||| |||||| |||||||||||||||||||| || ||||| Sbjct 3690 ATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCC 3631 Query 154455 AC 154456 || Sbjct 3630 AC 3629 >seq33 Length=99298 Score = 100 bits (110), Expect = 3e-16 Identities = 216/312 (69%), Gaps = 11/312 (4%) Strand=Plus/Plus Query 52503 AACGAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAG 52562 |||||| | || ||||||||||| || || ||||| |||||||| |||||| || | Sbjct 51599 AACGAGCTCATCTCGCGCGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCT-- 51656 Query 52563 ACGCGCGT-GACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621 ||| | | || || | | | || ||| || | |||| | |||||||| Sbjct 51657 -CGCACCTCGAGCGCCGCCCTC-ACCCCGAAACGGTCGAGCGCATCATTCGCGAGGCGGT 51714 Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAAC-G 52680 | ||||| ||||||| | || | |||||||| ||| |||| | ||||||||| | Sbjct 51715 CGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTATCGGCATGAACAG 51774 Query 52681 CGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCAGCTCGGG 52739 || || |||||| ||||||||||||| ||||| || || || || ||| ||| || Sbjct 51775 CGACCTC-ATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATCGCA-CTC-GG 51831 Query 52740 CAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGA 52798 || | | ||| || | || || ||||| || |||||| ||| || ||| | || Sbjct 51832 CAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATCTCGATGGA 51891 Query 52799 GGGCAAGACCAA 52810 |||||||||||| Sbjct 51892 GGGCAAGACCAA 51903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260880196400