Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq186 125 7e-24
seq156 113 4e-20
seq216 102 8e-17
seq206 86.0 6e-12
seq176 84.2 2e-11
seq33 82.4 7e-11
>seq186
Length=108833
Score = 125 bits (138), Expect = 7e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||| ||| | || | || ||||| || || || ||||||||
Sbjct 60722 CCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAA 60781
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| ||| || ||||| || || ||| ||||||| |||||||| ||||||||
Sbjct 60782 AGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGG 60841
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
||||||||||||||| || || ||||| | |||| ||||||| ||| ||
Sbjct 60842 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACC 60901
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115
|||| ||| | || |||||||| || || || || || ||||||||||
Sbjct 60902 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATGG 60950
Score = 105 bits (116), Expect = 6e-18
Identities = 139/190 (73%), Gaps = 2/190 (1%)
Strand=Plus/Plus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
||||||||| || | ||| || | || | || || || |||||||| ||||||||
Sbjct 59838 TCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATCTTG 59897
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
| |||||| || || ||||| || || ||| ||||||| |||||||| ||||| ||
Sbjct 59898 AAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGCGG 59957
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064
||||||||||||||| || || ||||| |||| |||| ||||| | |||||
Sbjct 59958 GATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCGGACGACTCGA 60016
Query 127065 CTTCGACGGT 127074
| |||| |||
Sbjct 60017 CCTCGAGGGT 60026
Score = 104 bits (114), Expect = 2e-17
Identities = 138/189 (73%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||| ||| | || | || |||||||| || || ||||||||
Sbjct 60139 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 60198
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| || || ||||| || || ||| ||||||| |||||||| ||||||||
Sbjct 60199 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGA 60258
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| || || ||||| |||| |||| ||||||| ||||||
Sbjct 60259 ATGCCCTCCTTGTCCTGAATCTTGGCCTTGACGTTG-TCGATCGTGTCCGACGACTCGAC 60317
Query 127066 TTCGACGGT 127074
|||| |||
Sbjct 60318 CTCGAGGGT 60326
>seq156
Length=1186
Score = 113 bits (124), Expect = 4e-20
Identities = 135/181 (75%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | || | ||||| || | ||| ||||| || ||||| || || ||||
Sbjct 199 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 258
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| || || ||| ||||||| |||||||| || || ||
Sbjct 259 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 318
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
||||||||||||||| ||| || ||||| |||| |||| |||||||| ||||||
Sbjct 319 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCGATGGTGTCCGACGACTCGAC 377
Query 127066 T 127066
|
Sbjct 378 T 378
>seq216
Length=137410
Score = 102 bits (112), Expect = 8e-17
Identities = 213/314 (68%), Gaps = 15/314 (5%)
Strand=Plus/Minus
Query 47244 AACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTTGCCTG---TCTCTACTA- 47299
|||||||| |||||| | || ||||| || |||||| |||||||||| ||||| |
Sbjct 25396 AACGAGCTCATCTCGCGCGATGAAGGTCTTCACACCGACTTTGCCTGCCTTCTCTTTTCG 25337
Query 47300 CAACACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGT--CAGCGACATGTTTGCCGAA 47357
|| | | || | ||| || | || |||||||| || | | || | ||||||
Sbjct 25336 CACCTCGAGCGCCGACCA------GCAC---CCCACCGTGTCACCCAGATTATCGCCGAA 25286
Query 47358 GCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATG 47417
||||||| || ||| || || | | || || |||||| || | || |||
Sbjct 25285 GCCGTCGAGATCGAGCAAGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATG 25226
Query 47418 AACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTA 47477
||||| | ||| || |||||||||| || ||||| ||||| |||| || |||
Sbjct 25225 AACGCCACCCTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTC 25166
Query 47478 AAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTC 47537
| | |||| | ||| | ||||||| || ||||| |||||| | | || ||| |
Sbjct 25165 GGGAACGACAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATG 25106
Query 47538 GAGGGCAAGACCAA 47551
||||||||||||||
Sbjct 25105 GAGGGCAAGACCAA 25092
>seq206
Length=411018
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975
||| ||||| || | || ||||| ||||| | | |||| ||| || || || || ||
Sbjct 70348 CGTCGACTCGTTCTCGATGTTGTAGTCGCCGACTGCGCGATGATCTTCGAGTTGCTTCCC 70407
Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035
||| ||||||| |||||||| ||||| || ||||||||||||||| | | || |||
Sbjct 70408 TGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGGGTCTTGACCTT 70467
Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGA 127070
|| | | || ||||||| |||||| ||||
Sbjct 70468 GACGTCGTAGATTGTGTCCGACGACTCGACCTCGA 70502
>seq176
Length=250200
Score = 84.2 bits (92), Expect = 2e-11
Identities = 111/154 (72%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943
|| || ||||||| ||||| || | ||| | || || || |||||| ||||| ||
Sbjct 112783 GCGCCGCCGCGTAGGCGCAAGACGAGATGAAGGGTCGAATCCCTTTGAACCTTGTAGTCT 112842
Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003
| | |||||| || || ||||| || || ||| | || | |||||||| ||||||
Sbjct 112843 TCGAGCGTGCGGCTGTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGA 112902
Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA 127037
|| ||||||||||||||| ||| || |||||
Sbjct 112903 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA 112936
>seq33
Length=99298
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| ||||| | |||| ||| | || | || |||||||| || || ||||||||
Sbjct 194 CCTCCGCGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAA 253
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || ||| || || ||||| || || ||| |||| | |||||||| ||||||||
Sbjct 254 AGAGTACGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGG 313
Query 127007 ATGCCCTCCTTGTCCGTGATTTT 127029
||||||||||||||| ||| ||
Sbjct 314 ATGCCCTCCTTGTCCTGGATCTT 336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475499343778800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |