Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq186 95.1 1e-14
seq156 91.5 1e-13
>seq186
Length=108833
Score = 95.1 bits (104), Expect = 1e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| ||||||||||| | || ||| || || || || || ||||| ||||| || |||||
Sbjct 60719 ATGCCTCCGCGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCC 60778
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| || | ||| || | || || || ||| | ||||| || |||||||| ||
Sbjct 60779 GAAAGAGTACGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGA 60838
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|| ||||| || || || ||||| || |||| || | ||||| || |||||
Sbjct 60839 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCA 60898
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| ||||| || | || |||||||| || || || || || || |||||
Sbjct 60899 ACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 60948
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/192 (72%), Gaps = 4/192 (2%)
Strand=Plus/Plus
Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171
|||| ||||| | |||||| || || ||||| || ||||||||||| || || |||||
Sbjct 59837 TTCCACCGCGCAACCTCAAAACGAGGTGCAGGGTCGATTCCTTTTGAATGTTGTAATC-T 59895
Query 45172 TGACG-GTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
||| | || || || | || || || ||| | ||||| || |||||||| |||
Sbjct 59896 TGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGC 59955
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|| ||||| || || || ||||| || |||| || | || | |||||||| |||||
Sbjct 59956 GGGATGCCCTCCTTGTCCTGAATCTTGGCCTTGA-CGTTGTCGATCGTGTCGGACGACTC 60014
Query 45290 GACTTCGAGAGT 45301
||| ||||| ||
Sbjct 60015 GACCTCGAGGGT 60026
>seq156
Length=1186
Score = 91.5 bits (100), Expect = 1e-13
Identities = 135/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Plus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| |||||||| | | ||| || |||||||| || ||||| || || ||||| ||||||
Sbjct 199 CCACCGCGGAGACGAAGCACCAGGTGCAGCGTCGACTCCTTCTGAATGTTATAGTCGCTG 258
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| || || || | || || || ||| | ||||| || |||||||| ||||||
Sbjct 259 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGCGGA 318
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292
||||| || || || || || || |||| || | || | |||||| || ||||||||
Sbjct 319 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGACGACTCGAC 377
Query 45293 TTCGAGAGT 45301
| ||| ||
Sbjct 378 TGTGAGCGT 386
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 452001815740200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |