Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq145 167 3e-36 seq236 105 8e-18 >seq145 Length=5427 Score = 167 bits (184), Expect = 3e-36 Identities = 487/739 (66%), Gaps = 17/739 (2%) Strand=Plus/Minus Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 || |||||||||||||| | || | |||||||| |||| || ||| || || | | Sbjct 4371 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 4312 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | || | ||| || | ||| ||||| || ||||||| ||| ||||| | | Sbjct 4311 CAGAGCTTCTG-GGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 4253 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAA 116729 || ||| ||||| || || |||| ||| || ||||||| | || ||||| Sbjct 4252 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 4193 Query 116730 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 116789 ||| | ||| | || || ||| || |||| |||||||||||| || |||||||| || Sbjct 4192 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 4133 Query 116790 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 |||| | || || ||| | || || | || || || || | || | || Sbjct 4132 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 4073 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG---ACG 116906 || | ||| || ||||||||||| || ||||| | |||| | ||| ||| Sbjct 4072 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 4013 Query 116907 ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966 || |||||| || || | ||| || ||| | ||||| ||||| || ||||| || Sbjct 4012 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 3953 Query 116967 ATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTTGTTGGCTCTGACATCGTGGATG 117024 | || | ||| || || || ||| |||||| | | | || | || | |||||| Sbjct 3952 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCC--GGTCGCGCGGATGTTGTGGATC 3895 Query 117025 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAG 117084 | ||| || || || ||| ||| ||||| | |||||| | |||| || ||||| Sbjct 3894 GAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 3835 Query 117085 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTT 117144 || || ||||||||||| |||| | | || ||||||||| ||| | || || Sbjct 3834 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 3775 Query 117145 GGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 117203 || || || ||||||||||| || || | ||||| | || |||| | ||||| Sbjct 3774 GGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTACCGCTCCGACATGAG 3716 Query 117204 ATCGTAGGTCTCCAAGACAGAGGG---AATGTCTTCCCCGTGAATACCGATTGAGACCCG 117260 | ||| ||||| || | | | |||||| || ||||| || |||| | ||| || Sbjct 3715 GTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACG 3659 Query 117261 CATAAACATGTATTGGGGT 117279 ||| | ||||| || ||| Sbjct 3658 CATGAGCATGTGCTGCGGT 3640 >seq236 Length=218215 Score = 105 bits (116), Expect = 8e-18 Identities = 106/138 (77%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 10711 GGGAACCTCAACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGG 10770 || |||||| |||| || | |||||||||||||| |||||||| || | ||||||| Sbjct 157970 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGCGACTATGTCGAGGGCATGTGG 158029 Query 10771 CTCGTACTCCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 10830 | | | ||||| || || || | ||||| | |||| ||||||| || ||||| ||| || Sbjct 158030 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACCGGCGAGACCCACCCC 158089 Query 10831 GTCAGGGAGTTCGTTGAG 10848 ||| | |||||||| ||| Sbjct 158090 GTCCGCGAGTTCGTCGAG 158107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505321134200