Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq186 109 1e-18 seq217 98.7 2e-15 seq33 98.7 2e-15 seq222 95.1 3e-14 >seq186 Length=108833 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||| |||||| || | | ||| Sbjct 60728 CGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAAAGAGTA 60787 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || |||||||| | ||||||||||| ||| || || Sbjct 60788 CGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCC 60847 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || |||| ||||| | | || || || | Sbjct 60848 TCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGG 60907 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || || || || || || Sbjct 60908 GTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTG 60945 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || ||||||||||| |||||||| ||||| | | ||| Sbjct 60436 CGGAGACGCAGCACGAGGTGAAGGGTCGACTCCTTCTGGACGTTATAGTCCGAAAGAGTA 60495 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || |||||||| | ||||||||||| ||| ||||| Sbjct 60496 CGACCATCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCC 60555 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 60556 TCCTTGTCCTGGATCTT 60572 Score = 96.9 bits (106), Expect = 8e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| |||||||| || |||| |||||| || | | ||| Sbjct 60145 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 60204 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || |||||||| | ||||||||||| ||| ||| || Sbjct 60205 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCC 60264 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||||||||| ||| ||| |||| ||||| Sbjct 60265 TCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGATCGTGTC 60305 >seq217 Length=194401 Score = 98.7 bits (108), Expect = 2e-15 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || ||||||||||| || | ||||||||||| | ||| | || || Sbjct 61201 AGGACGAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCC 61142 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||| |||||||| ||||||||||| || || || || ||| Sbjct 61141 TCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 61082 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTC 199569 || ||||| ||| ||| |||| ||||| Sbjct 61081 TGGATCTTGGCCTTGACGTTGTCGATCGTGTC 61050 >seq33 Length=99298 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || |||||||| |||||||| || |||| |||||| || | | ||| Sbjct 200 CGGAGACGCAGCACGAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCCGAAAGAGTA 259 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || ||||||||||||||||||||||| ||| || || Sbjct 260 CGACCGTCCTCGAGCTGCTTCCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCC 319 Query 199529 TCTCGCTCCTGAATCTT 199545 || ||||| ||||| Sbjct 320 TCCTTGTCCTGGATCTT 336 >seq222 Length=148624 Score = 95.1 bits (104), Expect = 3e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| |||||||| ||||||||||| |||| ||||||||| | | ||| Sbjct 94944 CGAAGACGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTG 95003 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | || || || |||||||| || |||||||| | ||||||||||| || Sbjct 95004 CGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCGGG 95053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178917899291415