Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq216 114 1e-20
seq186 102 8e-17
seq33 102 8e-17
seq222 95.1 1e-14
seq176 89.7 5e-13
seq217 84.2 2e-11
>seq216
Length=137410
Score = 114 bits (126), Expect = 1e-20
Identities = 132/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277
||| || || ||||| || || || |||||| | | |||||| || | ||| | |||
Sbjct 25845 GATCTGGAAACCGTAGAAACAGCGGGCCTCGGCGATCTGCACCTCGGCCGAGAACCTCTC 25904
Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337
|||| || ||||| ||||||||||| ||||||||| ||||| || || ||| |||
Sbjct 25905 CACCAAGTTCTCGTTCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGGACATGCGAGAT 25964
Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395
||| || ||||||||||| ||| || |||||||| | | |||||| || | ||||
Sbjct 25965 GAAGTGCCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCCTTCGAAATGTCC 26022
>seq186
Length=108833
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | |
Sbjct 60948 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 60889
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | || | || || | ||||| ||||| || || |||||||
Sbjct 60888 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 60829
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| | || | |||||| || ||||| || || | || || || || ||||||
Sbjct 60828 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 60769
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| ||||| |||| || || | |||||||||
Sbjct 60768 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGT 60733
>seq33
Length=99298
Score = 102 bits (112), Expect = 8e-17
Identities = 114/151 (75%), Gaps = 1/151 (1%)
Strand=Plus/Minus
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|||||||| | |||||| || |||||||| || |||| ||||| ||| || ||||||
Sbjct 51487 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 51428
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| |||||||||||| ||||| || || |||||||||||||| || | | | |
Sbjct 51427 ATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGAGCGCTCGTCCGAG 51368
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104
||||| |||||||| |||||||| ||||
Sbjct 51367 ATCCAAGTGAGCGCCCACTCGGCCTTCTTCT 51337
Score = 86.0 bits (94), Expect = 6e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379
|||| | || |||| ||||| ||||| || || ||||||| ||||| ||||| | ||
Sbjct 344 TTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCG 285
Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439
|||| || ||||| || |||| || || || || ||||||||||| || || |||
Sbjct 284 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 225
Query 38440 CGCTGCATTTGGTGCTGCGT 38459
| || || | |||||||||
Sbjct 224 CCCTCCACCTCGTGCTGCGT 205
>seq222
Length=148624
Score = 95.1 bits (104), Expect = 1e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || ||| ||||||| ||||| | || | |||||||||
Sbjct 95080 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAG 95021
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| ||||| ||| |||||||||||||| ||||| |||| || ||
Sbjct 95020 CAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 94961
Query 38448 TTGGTGCTGCGT 38459
| || || |||
Sbjct 94960 CTCGTCCTCCGT 94949
>seq176
Length=250200
Score = 89.7 bits (98), Expect = 5e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || || ||||||| ||||||||||| | |||||| ||
Sbjct 112928 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCGCGGGGAAG 112869
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || ||| ||||| ||| | |||||||| | |||| ||| |||| || |||
Sbjct 112868 CAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGACCCTTCAT 112809
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
| || |||| | | ||||||
Sbjct 112808 CTCGTCTTGCGCCTACGCGGCGGC 112785
>seq217
Length=194401
Score = 84.2 bits (92), Expect = 2e-11
Identities = 121/168 (72%), Gaps = 2/168 (1%)
Strand=Plus/Plus
Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338
|||||| |||| |||||| | | |||| | | |||| | || | || |||| ||
Sbjct 61026 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 61084
Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398
||| ||||| || ||| | ||||| ||||| ||||| | || ||||| ||||| || ||
Sbjct 61085 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 61144
Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| ||||| || ||||||||||| || ||||| |||| || ||
Sbjct 61145 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCA 61192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500171268220800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |