Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq216 114 1e-20 seq186 102 8e-17 seq33 102 8e-17 seq222 95.1 1e-14 seq176 89.7 5e-13 seq217 84.2 2e-11 >seq216 Length=137410 Score = 114 bits (126), Expect = 1e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || || ||||| || || || |||||| | | |||||| || | ||| | ||| Sbjct 25845 GATCTGGAAACCGTAGAAACAGCGGGCCTCGGCGATCTGCACCTCGGCCGAGAACCTCTC 25904 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 |||| || ||||| ||||||||||| ||||||||| ||||| || || ||| ||| Sbjct 25905 CACCAAGTTCTCGTTCACGATGCCGTCCGAGGCGGCGAAGAAGGCGAGGACATGCGAGAT 25964 Query 133338 GAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCC 133395 ||| || ||||||||||| ||| || |||||||| | | |||||| || | |||| Sbjct 25965 GAAGTGCCGCTCGTTGTCCGTCAGTCGGTCCCAGTCCCACAGGTCCTTCGAAATGTCC 26022 >seq186 Length=108833 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || ||| | | Sbjct 60948 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 60889 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | ||||| ||||| || || ||||||| Sbjct 60888 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 60829 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| | || | |||||| || ||||| || || | || || || || |||||| Sbjct 60828 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 60769 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| ||||| |||| || || | ||||||||| Sbjct 60768 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGT 60733 >seq33 Length=99298 Score = 102 bits (112), Expect = 8e-17 Identities = 114/151 (75%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 |||||||| | |||||| || |||||||| || |||| ||||| ||| || |||||| Sbjct 51487 CCGGGCATCAAGCCGCGCTTCTTGAGCCAGAAGATGGACGCGAACGAGCCGGAGAAGAAG 51428 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | |||||||||||| ||||| || || |||||||||||||| || | | | | Sbjct 51427 ATGCCCTCGACGGCGGCGAACGCGACGAGGCGCTCGCCGAAGACGGAGCGCTCGTCCGAG 51368 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCT 133104 ||||| |||||||| |||||||| |||| Sbjct 51367 ATCCAAGTGAGCGCCCACTCGGCCTTCTTCT 51337 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 38320 TTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACG 38379 |||| | || |||| ||||| ||||| || || ||||||| ||||| ||||| | || Sbjct 344 TTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCG 285 Query 38380 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGA 38439 |||| || ||||| || |||| || || || || ||||||||||| || || ||| Sbjct 284 CGGGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGA 225 Query 38440 CGCTGCATTTGGTGCTGCGT 38459 | || || | ||||||||| Sbjct 224 CCCTCCACCTCGTGCTGCGT 205 >seq222 Length=148624 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| ||||||| ||||| | || | ||||||||| Sbjct 95080 AAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCGGGCAAG 95021 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| ||| |||||||||||||| ||||| |||| || || Sbjct 95020 CAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACCCTCCAC 94961 Query 38448 TTGGTGCTGCGT 38459 | || || ||| Sbjct 94960 CTCGTCCTCCGT 94949 >seq176 Length=250200 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || || ||||||| ||||||||||| | |||||| || Sbjct 112928 AAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCGCGGGGAAG 112869 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || ||| ||||| ||| | |||||||| | |||| ||| |||| || ||| Sbjct 112868 CAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGACCCTTCAT 112809 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 | || |||| | | |||||| Sbjct 112808 CTCGTCTTGCGCCTACGCGGCGGC 112785 >seq217 Length=194401 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 38280 ATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGA 38338 |||||| |||| |||||| | | |||| | | |||| | || | || |||| || Sbjct 61026 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACG-TCAAGGCCAAGATCCAGGA 61084 Query 38339 CAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||| ||||| || ||| | ||||| ||||| ||||| | || ||||| ||||| || || Sbjct 61085 CAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGA 61144 Query 38399 CGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || ||||| || ||||||||||| || ||||| |||| || || Sbjct 61145 CGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCA 61192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171268220800