Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq176 260 2e-64 seq173 132 6e-26 seq135 125 9e-24 >seq176 Length=250200 Score = 260 bits (288), Expect = 2e-64 Identities = 637/964 (66%), Gaps = 5/964 (1%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 || || || | |||||| || ||||| | || ||||| ||||| ||||| || ||||| Sbjct 34114 TCGCCGGTGAGGATGGCAGCCTGGACGGCGGCGCCGTACGCGACGGCCTCGTCCGGGTTG 34173 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 |||| || || | || || ||| || | || || | | | || | |||| Sbjct 34174 ATCGACTTGTTGGGCTCCTTGCCGCCGAAGAAGTCGGAGACGAGCTTCTGGACACGCGGG 34233 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || ||||| || ||||| | || || || | || | || || ||||| ||| Sbjct 34234 ATACGGGTCGAGCCGCCGACGAGGACAATCTCGTGGACCGACTGCTTGTCAATCTTCGAG 34293 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || || || ||||| || ||||| ||||| | |||| || || ||| Sbjct 34294 TCGCGGAGGACCTTCTCGACGGGCTCCATGGTCGAGCGGAAGAGGTCCTGGCAGAGCTCC 34353 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || || || ||||| || || || ||||| || | ||| ||| | | ||| || || Sbjct 34354 TCGAAGCGGGCGCGGGTGATCGAGGTGTAGAAGTCGATGCCCTCGAAGAGCGAGTCGATC 34413 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || || || || || || | ||| || | || ||||| |||||||| || || || || Sbjct 34414 TCGATCGTGGTCTGGGCGGCCGACGAGAGGGTGCGCTTGGCGCGCTCGCAGGCGGTGCGG 34473 Query 7370 AAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT 7429 | || || ||||| || | ||| || | || ||||| | || || || ||||| Sbjct 34474 AGGCGGCGGAGGGCGCGGGCGTTCGACGAGAGGTCCTTCTTGTTCTTGCGCTTGAACTCG 34533 Query 7430 TCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCC 7489 | ||||| | ||| | || || || || || || | ||| || || || Sbjct 34534 GCGACAAAGTGGTTGACGAGGCGGTTGTCAAAGTCCTCGCCGCCGAGGTGGGTGTCGCCG 34593 Query 7490 GCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTA 7549 ||||| || ||||| || ||||| || | || || | | | ||| || || ||||| Sbjct 34594 GCGGTGGCCTTGACCTCGAAGATGCCCTCCTCGATCGTGAGGAGCGAGACGTCGAACGTG 34653 Query 7550 CCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCG 7609 || || |||| ||| || ||||| |||||| | ||| | || ||||| ||||| ||| Sbjct 34654 CCGCCTCCCAAGTCGAAGATGAGGACGTTCTTCTCGCCCTCGGACTTCTTGTCGAGGCCG 34713 Query 7610 TACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATA 7669 |||||||| || || || || || || || || || || || ||| ||||| | || Sbjct 34714 TACGCGATGGCGGCGGCGGTGGGCTCGTTGATGATGCGGAGGACGTTGAGGCCCGAGATC 34773 Query 7670 GTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACG 7729 | || || || || || || || ||||| ||||| |||||||| ||||| || ||| Sbjct 34774 AAGCCGGCGTCCTTGGTGGCCTGGCGCTGCGAGTCGTTGAAGTAGGCGGGGACGGTGACG 34833 Query 7730 ACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGA 7789 || |||| | ||| | ||||| || | || || | || ||||| ||| || Sbjct 34834 ACGGCGTTGGCGACGGTGCCGCCGAGGTAGGCCTCGGCCGTCTCCTTCATCTTGAGGAGG 34893 Query 7790 ACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCA 7849 |||||||| || ||||| || | || |||| ||| || || || | || || Sbjct 34894 ACCATCGACGAGATCTCCTCGGGCGTGAACTCCTTCTGCTCGCCCTTGTACTCGACCGAG 34953 Query 7850 ATCATGGGTTTATCCGCAGCAC-CGGGGATAACCTTATACGACCAATCTTTCATATCGTC 7908 || ||||| || ||| || | ||| ||||| ||| ||| | ||||| ||| Sbjct 34954 ATGATGGGCTTGCCCG----ACTTGTCGATGACCTTGAACGGCCAGTGCTTCATGTCGGA 35009 Query 7909 TTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTT 7968 ||||||| ||| | |||||| | |||||| || ||||| || ||||| || ||| | Sbjct 35010 CTGGACCTCGGCGTCGGCAAACTTGCGTCCGATGAGGCGCTTGGCGTCAAAGACGGTGCT 35069 Query 7969 TTTG 7972 ||| Sbjct 35070 GTTG 35073 >seq173 Length=350542 Score = 132 bits (146), Expect = 6e-26 Identities = 522/812 (64%), Gaps = 27/812 (3%) Strand=Plus/Plus Query 7013 CCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATC 7072 || || | || |||||| ||||| | || ||||| ||||| ||||| |||||||| ||| Sbjct 50288 CCGGTGAGGACGGCGGCCTGGACGGCGGCACCGTACGCGACGGCCTCGTCGGGGTTGATC 50347 Query 7073 GTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATT 7132 | || || || | ||| ||| | || || | | || || || ||||| Sbjct 50348 GACTTGTTGAGCTGGCGGCCGCCAAAGAACTCGGAGACGAGCGACTGGATCTTGGGGATA 50407 Query 7133 CGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTC- 7191 || ||||| || ||||| | || || || | || || || || |||||||| | ||| Sbjct 50408 CGGGTCGAGCCGCCGACGAGGACAATGTCGTCGACCTTGGACTTGTCGATCTTGGCGTCC 50467 Query 7192 -TC--GAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTC 7248 || || | | | |||| || || | ||||| ||| | | || Sbjct 50468 TTCAAGACGCGCT----CGACGGGGTCGAGGGTCGAGCGGAAG--GTCGCGGCGTTGATC 50521 Query 7249 --CTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCA 7306 ||| || || ||||| | || || | |||| || ||| | | | | ||| || Sbjct 50522 TCCTCGAAGCGGGCACGCGAGATCGAGGCCGAGAAGTCCTGGCCCTGGAAGAGCGAGTCG 50581 Query 7307 ATTTCAATGGTTGTTTG--TGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCG 7364 | || | ||| || || || || || || | || ||||| || ||||| ||||||| Sbjct 50582 ACCTCGACGGTGGTCTGGGTGACG--GACGAGAGGGTGCGCTTGGCACGCTCGCACGCCG 50639 Query 7365 TTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAA 7424 || | ||| || || || || | || || || || || ||| || || | || Sbjct 50640 AGCGGAGACGGCGGAGCGCGCGGGCGTCGCCCGAGATGTCGAGCTTGGTCTTGCGCTCAA 50699 Query 7425 ACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTA 7483 |||| | |||||| |||| |||| | || || || ||||| || | ||| || Sbjct 50700 ACTCCTTCTTGAAGTGCTCGA-GGAGCGTGTTGTCAAAGTCCTCACCGCCGAGGTGGGTG 50758 Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || ||||| ||||| |||||| || || || | | ||| ||||| Sbjct 50759 TCTCCGGCCGTCGCCTTGACGGCAAAGACGCCACCGGTGATCGAGAGGAGCGAGACATCG 50818 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGT-------CGTCTTTGTT 7596 ||||| || || || ||||| || ||||| || || | || | | ||| || Sbjct 50819 AACGTGCCGCCTCCGAGGTCGAAGATGAGGACAATCTTCTCCTTCTTCGACTTCTCGGTC 50878 Query 7597 --CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||||||||||| || ||||| || || || || || || || || | Sbjct 50879 GCCTCGCCGAGACCGTACGCGATCGCAGCCGCGGTGGGCTCGTTGATGATGCGGAGGACG 50938 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 | |||||||| || || | || || || |||| | || ||||| ||||| |||||| Sbjct 50939 TCGAGGCCAGCGATCGTGCCGGCGTCCTTGGTCGAGAGACGCTGCGAGTCGTTGAAGTAG 50998 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || |||||||| | ||| || | | |||| | ||| || | | | ||| || | || Sbjct 50999 GCAGGGACCGTGATGACGGCCTTCTTGACCTCCTTGCCAATCTTGGCTTCGGCCGTCTCC 51058 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 || | |||| |||||||| | || ||||| Sbjct 51059 TTGAGCTTGGAGAGAACCATGGCCGAGATCTC 51090 >seq135 Length=637958 Score = 125 bits (138), Expect = 9e-24 Identities = 416/641 (65%), Gaps = 12/641 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || || || || || | ||| || || || ||||| || ||| ||||| | || Sbjct 21619 TCAAAGTCCTCTCCGCCGAGGTGGGTGTCACCGGCGGTGGCGAGGACCTCAAACACGCCG 21560 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || || | | ||| || || ||||| || || || ||||| | | || | | Sbjct 21559 TCGTCGATCGAGAGGAGCGAGACGTCGAACGTGCCGCCGCCGAGGTCGTAGACGATGATG 21500 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || ||| || | | |||| ||||| ||||||||||| || || ||||| || || Sbjct 21499 TTGCGCTCGCCGCC---GGTCTTGTCGAGTCCGTACGCGATCGCGGCGGCCGTCGGCTCG 21443 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | | || || ||| ||||| || || || | || || || || || || || Sbjct 21442 TTGACGACGCGGAGGACGTTGAGGCCGGCGATCGTGCCGGCGTCCTTGGTGGCCTGGCGC 21383 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||||||||| || ||||| |||| |||||| || | || || Sbjct 21382 TGGGCGTCGTTGAAGTAGGCCGGGACGGTGACGACGGCGTGCGTGACCTTGGTTCCAAGG 21323 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 |||| || || | || ||||| ||| || ||||| | || | ||| || | | Sbjct 21322 TACGTCTCGGCCGTCTCCTTCATCTTGCCGAGGACCATGGCCGAGACCTCCTCGGGGGTG 21263 Query 7817 AAC-TGTT--TCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 ||| | || || | || ||| | | || || |||| ||| | | | | ||| Sbjct 21262 AACGTCTTGCTCTTGTCGCCG---ACCTTGACCTCGATCACGGGCTGCTTCATCGAGCCG 21206 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 | | ||||| ||| | | |||| ||| ||||||| | ||| ||| Sbjct 21205 GCCTTGACCTTGAACGGGTAGTGCGTCATGTCGCGCTGGACCTCCTTGTCGTCAAAGCGG 21146 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | |||||| || ||||| || ||||| | ||||| | |||||| ||| |||||| Sbjct 21145 CGTCCGATCAGGCGCTTGGCGTCAAAGATCGTGTTGGTCGGGTTCGAGGCGTACTGGTTC 21086 Query 7994 TTCGCCGCGTCCCCGATAAGACGTT--CATTATTTTCCGTA-AACGCGACGTACGATGGG 8050 || || ||||| ||||| || || | | | | | || |||||||| || ||| Sbjct 21085 TTGGCGGCGTCGCCGATCAGGCGCTCGCCGGACGAGGGGGAGAAGGCGACGTAGGACGGG 21026 Query 8051 GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 || | || || || |||||||| || || || || ||||| Sbjct 21025 GTGATGCGGTTGCCCTGGTCGTTGGCGATGATCTCGACGCG 20985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635130854905800