Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq145 152 6e-32
seq198 93.3 5e-14
>seq145
Length=5427
Score = 152 bits (168), Expect = 6e-32
Identities = 486/741 (66%), Gaps = 21/741 (3%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| |||||| |||| ||||| || || || ||||| |
Sbjct 3641 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 3700
Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730
| ||||| ||| || ||||| | |||| || | ||||| | || || |||||
Sbjct 3701 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTT-ACGCACGCCTCGCCGACGCTCTT 3759
Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790
|||||| || || || || || | || || ||||| | | | ||||| ||
Sbjct 3760 CAACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGA 3819
Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850
|| ||| | ||||| |||| ||| |||| || || | ||||| ||| ||| ||
Sbjct 3820 CTCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGG 3879
Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTAT-TAGA-GGTACA 111908
|| ||||| | ||||| | || | || | | | |||||| | | || ||
Sbjct 3880 CGGCATCGGTCTCTCGATCCACAACATCCGCGCGACC--GGCTCGTACATCGCCGGCACG 3937
Query 111909 AATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTAT 111968
|| || | || | || || || || ||||| ||||| | ||| ||| ||||||||
Sbjct 3938 AACGGCTACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTAC 3997
Query 111969 GTAAACCAAGCTGGGCGTCG-CAAG------GGATCTATCGCAGTCTATCTTGAGCCATG 112021
|| |||| ||||| | |||| || | |||| |||| || ||||| ||
Sbjct 3998 GTCGACCA----GGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTG 4053
Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081
|||||| || ||| | |||||||| || | || ||||| || | ||||||| ||
Sbjct 4054 GCACGCCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCG 4113
Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141
||||| | |||| || ||||||||||| || ||||||||| || | || ||| |
Sbjct 4114 CGCGCGCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCA 4173
Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201
|| ||| | ||| | ||||| || || | | |||||||||| ||| ||| | | ||
Sbjct 4174 GAACGGCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGG 4233
Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCG-ACGG 112260
|| ||||| | | || | | ||||| ||| | || |||| || | ||| ||
Sbjct 4234 CGACGAGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCA-AGCGCACCA 4292
Query 112261 TGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319
| || || | || | | ||| | || || ||| || | || |||||| || | ||
Sbjct 4293 TTCCCGC-CCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCC 4351
Query 112320 TATATGCTTTACAAAGACGCC 112340
| ||||| ||||| ||||||
Sbjct 4352 TTCATGCTCTACAAGGACGCC 4372
>seq198
Length=50111
Score = 93.3 bits (102), Expect = 5e-14
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 176911 CTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCACAGAGAGACCCGCAAC 176970
||| || || || |||||||||||||||| |||||||| || || | |||||||| ||
Sbjct 14833 CTTTCCGCGGAGCGGGAAGACACCGTAGTTGTCGCGACCGACGACGGCGAGACCCGAGAC 14892
Query 176971 CGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTACACTTG 177019
||||||| || || || || ||||| |||| |||||| || ||||||
Sbjct 14893 GGCGAGCGCCTTGGCCGAGTCTCCCTCGGTCAGGATGAGCGTGCACTTG 14941
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620740498976400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |