Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq176 264 1e-65 seq186 179 5e-40 seq217 150 2e-31 seq19 102 1e-16 seq33 93.3 6e-14 >seq176 Length=250200 Score = 264 bits (292), Expect = 1e-65 Identities = 871/1343 (65%), Gaps = 21/1343 (2%) Strand=Plus/Minus Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || ||||||||||| ||||| || || || ||||||||| | || | ||||| | Sbjct 35066 ACCGTCTTTGACGCCAAGCGCCTCATCGGACGCAAGTTTGCCGACGCCGAGGTCCAGTCC 35007 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| ||||| | | | ||| | || | || ||| ||||| || || Sbjct 35006 GACATGAAGCACTGGCCGT-TCAAGGTCATCGACAAGTCGGGC----AAGCCCATCATCT 34952 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 || || | | || ||| |||| | || | ||||| || || ||||| ||||| Sbjct 34951 CGGTCGAGTACAAGGGCGAGCAGAAGGAGTTCACGCCCGAGGAGATCTCGTCGATGGTCC 34892 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 | | |||||||||||||| || || | | | | || || || | || || | Sbjct 34891 TCCTCAAGATGAAGGAGACGGCCGAGGCCTACCTCGGCGGCACCGTCGCCAACGCCGTCG 34832 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCT- 195775 | || || || || ||||||| || || || || ||||| || |||||||| | ||| Sbjct 34831 TCACCGTCCCCGCCTACTTCAACGACTCGCAGCGCCAGGCCACCAAGGACGC--CGGCTT 34774 Query 195776 -ATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 || |||| || ||| || | || ||||| || || || || || || || || || Sbjct 34773 GATCTCGGGCCTCAACGTCCTCCGCATCATCAACGAGCCCACCGCCGCCGCCATCGCGTA 34714 Query 195835 TGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGG 195894 || || |||||||| || | || || || || | ||||| || | || || || Sbjct 34713 CGGCCTCGACAAGAAGTCCGAGGGCGAGAAGAACGTCCTCATCTTCGACTTGGGAGGCGG 34654 Query 195895 TACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGC 195954 ||||| || ||||| || |||| || || | || || ||||| || ||||| || || Sbjct 34653 CACGTTCGACGTCTCGCTCCTCACGATCGAGGAGGGCATCTTCGAGGTCAAGGCCACCGC 34594 Query 195955 TGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCA-TTTGTCTG 196013 || || || || || || || || || || || || || || || |||||| | Sbjct 34593 CGGCGACACCCACCTCGGCGGCGAGGACTTTGACAACCGCCTCGTCAACCACTTTGTC-G 34535 Query 196014 ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTC-TGGAAATCCTAGGGCTCTTCGTCGG 196072 |||||| || ||||| ||||| || | || | ||| || | || || || || Sbjct 34534 CCGAGTTCAAGCGCAAGAACAAGAAGGACCTCTCGTCGAACGCC-CGCGCCCTCCGCCGC 34476 Query 196073 CTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTT 196132 || | || || || || || ||||| || || ||||| || | || || || | | | Sbjct 34475 CTCCGCACCGCCTGCGAGCGCGCCAAGCGCACCCTCTCGTCGGCCGCCCAGACCACGATC 34416 Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 ||||| || ||| | || || || || |||||||| || | || ||||| || || || Sbjct 34415 GAGATCGACTCGCTCTTCGAGGGCATCGACTTCTACACCTCGATCACCCGCGCCCGCTTC 34356 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || ||| | | || | || | | ||||| || || || | || || || Sbjct 34355 GAGGAGCTCTGCCAGGACCTCTTCCGCTCGACCATGGAGCCCGTCGAGAAGGTCCTCCGC 34296 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 ||| | ||||| || ||| ||| | || |||||||| || || || || |||||| Sbjct 34295 GACTCGAAGATTGACAAGCAGTCGGTCCACGAGATTGTCCTCGTCGGCGGCTCGACCCGT 34236 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 || ||| | || || | | || ||||||| || || ||||| || Sbjct 34235 ATCCCGCGTGTCCAGAAGCTCGTCTCCGACTTCTTCGGCGGCAAGGAGCCCAACAAGTCG 34176 Query 196373 ATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGT 196432 ||||||||||| || || || || || || || ||||| |||||||| || ||| | || Sbjct 34175 ATCAACCCGGACGAGGCCGTCGCGTACGGCGCCGCCGTCCAGGCTGCCATCCTCACCGG- 34117 Query 196433 GTTGACA---ATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTG 196489 |||| | || ||| || || || || || || || || || | || Sbjct 34116 --CGACACGTCCGAGAAGACCCAGGACCTCCTCCTCCTCGACGTCGCCCCTCTCTCGACC 34059 Query 196490 GGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCG 196549 ||| | || || || || ||||| ||||| || | || | ||||| || | ||| Sbjct 34058 GGTATCGAGACCGCCGGCGGTGTCATGACCAAGCTCATCCCGCGCAACACGACCGTCCCG 33999 Query 196550 ACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAA 196609 || |||||| | |||| || || || |||| || || || || || || || Sbjct 33998 ACCAAGAAGTCGGAGATCTTCTCGACCTACGCCGACAACCAGCCGGGCGTCTTGATCCAG 33939 Query 196610 GTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATTTG 196669 || || ||||| || ||| |||| | ||||| ||| | || || || | || || | Sbjct 33938 GTCTACGAAGGGGAGCGCGCCCGCACCAAGGACAACAACCTCCTCGGCAAGTTTGAGCTC 33879 Query 196670 ACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGAC 196729 |||| || || | || ||| | || || || ||||| | || |||||| || ||| Sbjct 33878 TCGGGCATCCCCCCCGCGCCCCGCGGCGTCCCCCAGATCGAGGTCACCTTCGACATCGAC 33819 Query 196730 GCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATT 196789 || || || || || |||||| | ||| ||||||| | | ||||| || | ||||| Sbjct 33818 GCCAACGGCATCCTCAACGTCTCGGCTTCGGACAAGACCACCGGCAAGTCGAACAAGATC 33759 Query 196790 GTGATTACCAATGACAAGGGGCG 196812 || ||||| ||||||| ||| Sbjct 33758 ACCATCACCAACGACAAGGTGCG 33736 >seq186 Length=108833 Score = 179 bits (198), Expect = 5e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || || ||||||||||||||||||||||| Sbjct 60948 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 60889 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| ||||||||||| || ||||| ||||| || ||||| ||| Sbjct 60888 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 60829 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || | || || || || || ||||| || ||||| ||||| || | ||||||||| Sbjct 60828 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 60769 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || ||||| || || Sbjct 60768 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCT 60737 Score = 165 bits (182), Expect = 1e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| || Sbjct 60029 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 59970 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || ||||| ||||| || | || || || || || |||||||| || Sbjct 59969 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGAC 59910 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGG 172077 ||||| || || ||||||||| |||||||||| || || || ||||| ||| | ||| Sbjct 59909 GGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTGAGG 59850 Query 172078 CTTCGGGGTGG 172088 | || ||||| Sbjct 59849 TTGCGCGGTGG 59839 Score = 150 bits (166), Expect = 2e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| || Sbjct 60329 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 60270 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| |||||||| ||||| ||||| || | || || || || || ||||| || || Sbjct 60269 AAGGAGGGCATTCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAC 60210 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || ||||| || | ||||||||| | || || ||||| || || ||||| || || Sbjct 60209 GGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACCCTCCACCTCGTGCT 60154 Score = 141 bits (156), Expect = 1e-28 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 ||||||||||||||||||||||| ||||| || || ||| |||| |||||||| || || Sbjct 60620 ATCACCCTCGAGGTTGAGTCGTCTGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 60561 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| || || || ||||| ||||| || | || || || || || ||||| || ||| Sbjct 60560 AAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAT 60501 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || ||||| || | || || ||||| || |||||||| || || ||||| || || Sbjct 60500 GGTCGTACTCTTTCGGACTATAACGTCCAGAAGGAGTCGACCCTTCACCTCGTGCT 60445 >seq217 Length=194401 Score = 150 bits (166), Expect = 2e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| |||||||| || || Sbjct 61026 ATCACCCTCGAGGTCGAGTCGTCGGACACGATCGACAACGTCAAGGCCAAGATCCAGGAC 61085 Query 171958 AAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGAT 172017 ||||| ||||| || || || ||||| || || || ||||| || || ||||| || || Sbjct 61086 AAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGAC 61145 Query 172018 GGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 || || || || |||| |||||| |||| |||||||| || || ||||| || || Sbjct 61146 GGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACCCTTCACCTCGTCCT 61201 >seq19 Length=224191 Score = 102 bits (112), Expect = 1e-16 Identities = 273/404 (68%), Gaps = 15/404 (4%) Strand=Plus/Minus Query 198459 GTTGAGGGTATCGACTCAGCTAAGGATGAGCTCGAGGAGATTGTTGATTTTCTTAAAAAC 198518 |||| || || ||| || ||||| ||| || |||| | || | || || || ||| Sbjct 77487 GTTGCCGGAATGGACGAGGCCAAGGAGGAGATCATGGAGTTCGTCAAGTTCCTCAAGAAC 77428 Query 198519 CCCGAAAAGTACTATGGAAGTGGTGCCCGAATCCCACGTGGTGCTCTTCTCGCCGGTGCC 198578 || ||| | ||| | | |||||| || || || || || | ||| |||| | Sbjct 77427 CCGGAACACTACGAGCGCCTCGGTGCCAAGATTCCCCGCGGCGCCATCCTCTCCGGCCCT 77368 Query 198579 CCGGGTACTGGTAAAACCCTTCTAGCTCGTGCTATCGCGGGTGAATCGAGTGTCCCCTTT 198638 || ||||| || || || || || || || | ||| || ||| | | |||||||| Sbjct 77367 CCCGGTACCGGCAAGACGCTCCTCGCCAAGGCGACCGCAGGCGAAGCCGGCGTCCCCTTC 77308 Query 198639 CT-TCAGTGCTCCG-CGGCGAGTTTCATCGAGATGTTCGTTGGTGTTGGTGCTAAGCGCG 198696 || || || ||||| | |||||| | ||||||||||||| || || ||||| | || | Sbjct 77307 CTCTCCGT-CTCCGGCTCCGAGTT-CGTCGAGATGTTCGTCGGAGTCGGTGCGAGCCGTG 77250 Query 198697 TCCGGGAACTCTTTGAGCAAGCACGTGAA-AATCAACCATGTATCATCTTCATTGATGAG 198755 |||| || ||||| | || || | ||| || || || ||||||||||| || ||| Sbjct 77249 TCCGAGACCTCTTCGCCCAGGC-CAAGAAGAACGCGCCGTGCATCATCTTCATCGACGAG 77191 Query 198756 ATTGACGCTGTTGGTAAGAAGCGTGGTGG-AACTAC-TACACCT----GGTAATGATGAG 198809 |||||||| | || | |||| | |||| || | ||| | || || || ||| Sbjct 77190 ATTGACGCGATCGG--AAAAGC-TCGTGGCAAGGGCGGACAGTTTGGCGGCAACGACGAG 77134 Query 198810 CGTGAGCAGACGATTAACCAGCTTCTCACTGAGATGGATGGTTT 198853 || ||| ||| | |||||||| ||| |||||||| ||||| Sbjct 77133 CGCGAGTCGACCCTCAACCAGCTCCTCGTCGAGATGGACGGTTT 77090 >seq33 Length=99298 Score = 93.3 bits (102), Expect = 6e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 171898 ATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGAT 171957 |||||||||||||| |||||||| ||||| ||||| ||| |||| ||||||||||| || Sbjct 74 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 15 Query 171958 AAGGAAGGCATTCC 171971 ||||| |||||||| Sbjct 14 AAGGAGGGCATTCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657860385296400