Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq186 120 3e-22 seq156 86.0 6e-12 >seq186 Length=108833 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || ||||| || || || || ||||| || || | Sbjct 60951 ACCATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCG 60892 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||| || ||||| || || || |||||||| Sbjct 60891 TCGGACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGAC 60832 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || |||||||| || ||||| ||||| |||||| | | | || ||||| Sbjct 60831 CAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTAC 60772 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| ||||| || ||| | ||| |||| | ||||||||| Sbjct 60771 AACATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGGC 60721 Score = 104 bits (114), Expect = 2e-17 Identities = 142/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 24740 ATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGAC 24799 || || ||||| || || | ||||||| | || | || || ||||| || ||| Sbjct 60029 ATCACCCTCGAGGTCGAGTCGTCCGACACGATCGACAACGTCAAGGCCAAGATTCAGGAC 59970 Query 24800 AAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT 24859 || || || || || ||||| || || || |||||||| || ||||| ||||| ||||| Sbjct 59969 AAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTTGAGGA- 59911 Query 24860 TCGAGAAACATG--TCA-GATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 || || || | ||| ||||| |||||||||||||||||||| || ||| | || ||| Sbjct 59910 -CG-GACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACCCTGCACCTCGTTTTG 59853 Query 24917 CGATTGCGCGGAGG 24930 | |||||||| || Sbjct 59852 AGGTTGCGCGGTGG 59839 >seq156 Length=1186 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || || || || |||||||| ||||| || Sbjct 341 AAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 282 Query 24848 CAGCTGGAGGATTCGAGAAACATG-TCAG--ATTATAACATTCAAAAGGAATCGACACTA 24904 ||||| ||||| | | || | |||| | ||||||||||| ||||| ||||| || Sbjct 281 CAGCTTGAGGACGGGCG---CACGCTCAGCGACTATAACATTCAGAAGGAGTCGACGCTG 225 Query 24905 CACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| ||||| | || | ||||| ||| Sbjct 224 CACCTGGTGCTTCGTCTCCGCGGTGGC 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449896222188600