Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq145 255 6e-63
seq186 143 3e-29
seq33 114 1e-20
seq176 102 8e-17
seq217 96.9 3e-15
seq222 93.3 4e-14
seq156 84.2 2e-11
>seq145
Length=5427
Score = 255 bits (282), Expect = 6e-63
Identities = 524/764 (69%), Gaps = 19/764 (2%)
Strand=Plus/Minus
Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991
|||||| ||||||||||| |||||| | || ||| || || ||||| | || |
Sbjct 4380 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 4321
Query 148992 ATGAACCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCG 149048
||| || ||| | ||| ||| | | ||| ||| | ||||||||||| |||
Sbjct 4320 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 4264
Query 149049 TATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108
|| ||||| || |||| | ||||||||| |||| ||| ||||| || |
Sbjct 4263 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 4204
Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168
||||| | ||| | ||| |||||| | | || |||| ||| || || |||||
Sbjct 4203 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 4144
Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228
| |||||| || | | | ||||||||| | || || ||| ||| |||
Sbjct 4143 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 4084
Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288
|||| ||| | ||| ||||| |||||||||||||| | ||| | |||| |||||||
Sbjct 4083 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC 4024
Query 149289 TTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345
||||||| |||||||||||||||| |||| | ||||||| |||| || | |||
Sbjct 4023 GGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATG 3964
Query 149346 GGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGC 149402
|| ||||| | | ||| |||||| || | ||| ||| |||| ||| ||
Sbjct 3963 GGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACGA--GCCGGTCGCGCGG 3907
Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCCG-CCGTACTTTGAGATGGCCGCGCA-GTCGC 149460
| ||||| | || |||||||||||| |||| ||| |||||| |||||| |||
Sbjct 3906 ATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCGCGCACGTCTT 3848
Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520
|||||| ||||||||||||||| |||| |||||| || | || ||||||||
Sbjct 3847 -GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACG 3789
Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580
| | ||||| |||||||||| ||| | || || |||||| ||||| ||
Sbjct 3788 AGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACC 3729
Query 149581 TCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTA 149640
|| ||| | | ||||| ||||| | |||| || ||||| ||||| |||||||| |
Sbjct 3728 GCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGA 3669
Query 149641 TGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684
||||| ||||| ||||| |||||||||||||| ||||| |||
Sbjct 3668 CCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 3625
Score = 143 bits (158), Expect = 3e-29
Identities = 298/444 (67%), Gaps = 0/444 (0%)
Strand=Plus/Minus
Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111
|||||| |||||| |||||||| || ||||| |||| | || |||| |||
Sbjct 5416 CGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTG 5357
Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171
| |||||||| |||||||||| | ||||||| | ||| || || ||| || |
Sbjct 5356 CGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTT 5297
Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231
||| | ||||||| |||||| | ||| || ||| |||| | | ||| | |
Sbjct 5296 CTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCG 5237
Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291
|||| ||||| || || | | || || || || |||||||||||||| || ||
Sbjct 5236 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACG 5177
Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351
|| || | |||| ||| |||| || |||| ||||||| ||| | |||||
Sbjct 5176 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAAGGATCTGACT 5117
Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411
||||| || || ||||| ||| | ||||||||||| | ||| | | ||
Sbjct 5116 GGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCAAT 5057
Query 148412 TTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471
|| ||||| | ||||||||||| || || ||| || |||||||||| ||||||
Sbjct 5056 CTTCTCCTTCAACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTA 4997
Query 148472 CTGCAGAATGCCGCGGCTAGCGGG 148495
||||| | |||| |||| |||||
Sbjct 4996 CTGCAAGAGGCCGTGGCTCGCGGG 4973
>seq186
Length=108833
Score = 143 bits (158), Expect = 3e-29
Identities = 154/202 (76%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520
||| ||||| ||||| || |||||||| | | | | |||| ||||||||||||||
Sbjct 60751 GGTCGACTCCTTCTGGATGTTGTAATC--CGAAAGAGTACGACCATCCTCGAGCTGCTTC 60808
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || | ||||||||||||||||||||||| |||||||| ||||| |
Sbjct 60809 CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCC 60868
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640
|||| | || | |||||| | | ||| || |||| ||||| ||| |||||||| ||
Sbjct 60869 TTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGG 60928
Query 133641 GTTTTTACGAAAATCTGCATGG 133662
|| || ||||| ||||||||||
Sbjct 60929 GTCTTGACGAAGATCTGCATGG 60950
Score = 109 bits (120), Expect = 5e-19
Identities = 123/163 (75%), Gaps = 4/163 (2%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520
||| ||||||||||| || |||||||| | | | | |||| |||||||||||||||
Sbjct 60168 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 60225
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| | || | ||||||||||||||||| ||||| |||||||| ||||| |
Sbjct 60226 CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCC 60285
Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|||| | || | |||||| | | ||| || |||| |||||
Sbjct 60286 TTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 60328
Score = 96.9 bits (106), Expect = 3e-15
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|||||||||||||| |||||| | || | |||||||||||||||||||| || ||||||
Sbjct 60502 TCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 60561
Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| |||||| ||||| | |||| |||||| | | ||| || |||| |||||
Sbjct 60562 TCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCAGACGACTCAACCTCGAGGGTGA 60619
Score = 93.3 bits (102), Expect = 4e-14
Identities = 117/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| || || || || || |||||||| | |||| |||||| |||||||| ||
Sbjct 59868 GGTCGATTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCC 59927
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| | || | |||||||||||||| |||||||| |||||||| ||||| |||
Sbjct 59928 CGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 59987
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| | || | |||||||| | ||| || |||| |||||
Sbjct 59988 GACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 60028
>seq33
Length=99298
Score = 114 bits (126), Expect = 1e-20
Identities = 96/116 (83%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520
||| ||||||||||| || |||||||| | | | | |||| |||||||||||||||
Sbjct 223 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 280
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| | ||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 281 CCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 336
>seq176
Length=250200
Score = 102 bits (112), Expect = 8e-17
Identities = 96/120 (80%), Gaps = 2/120 (2%)
Strand=Plus/Plus
Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564
||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 112857 GTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGGATGCCCTCCTT 112916
Query 133565 GTCGGTGATCTTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
||| |||||| ||||| | || || | |||| || || || || |||| ||||
Sbjct 112917 GTCCTGGATCTTGGCCTTGACGATG-TCGATCGTGCTGGAGGACTTGACATCGAGAGTGA 112975
>seq217
Length=194401
Score = 96.9 bits (106), Expect = 3e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 61187 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 61128
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||| ||||||||||| || |||||||| |||||||| |||||| |||
Sbjct 61127 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 61068
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623
|| | || | |||||| | | ||| || |||| |||||
Sbjct 61067 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 61027
>seq222
Length=148624
Score = 93.3 bits (102), Expect = 4e-14
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||| ||||| ||||| || ||||| || | ||| ||||||||||||||||||
Sbjct 94967 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 95026
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| | || | |||||||||||||| |||||||| |||||||| |||||| |||
Sbjct 95027 CGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 95086
Query 133583 GAGCTG 133588
|| |||
Sbjct 95087 GACCTG 95092
>seq156
Length=1186
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || || || |||| | |||| | |||||| |||||||||||
Sbjct 229 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 288
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
||| | || | ||||||||||| || || ||||| |||||||| |||||| ||||
Sbjct 289 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 348
Query 133584 A 133584
|
Sbjct 349 A 349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483419319523800
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