Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq145 255 6e-63 seq186 143 3e-29 seq33 114 1e-20 seq176 102 8e-17 seq217 96.9 3e-15 seq222 93.3 4e-14 seq156 84.2 2e-11 >seq145 Length=5427 Score = 255 bits (282), Expect = 6e-63 Identities = 524/764 (69%), Gaps = 19/764 (2%) Strand=Plus/Minus Query 148932 CTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACT 148991 |||||| ||||||||||| |||||| | || ||| || || ||||| | || | Sbjct 4380 CTGTTGGCGGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGG 4321 Query 148992 ATGAACCGATGCAGGTC--CTGCGCGCGCACT-TGCTGCTCGTAGCGACCCTCCTGCTCG 149048 ||| || ||| | ||| ||| | | ||| ||| | ||||||||||| ||| Sbjct 4320 ATGG--CGTACCAGAGCTTCTGGGCGGGAATGGTGC-GCTTGGCGCGACCCTCCTTCTCA 4264 Query 149049 TATAAAGTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTG 149108 || ||||| || |||| | ||||||||| |||| ||| ||||| || | Sbjct 4263 TACTTCTCGAACAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCG 4204 Query 149109 TGCGGGCACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGC 149168 ||||| | ||| | ||| |||||| | | || |||| ||| || || ||||| Sbjct 4203 GCAGGGCAGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGA 4144 Query 149169 ACCCAGAGCGCGTACATGAGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGC 149228 | |||||| || | | | ||||||||| | || || ||| ||| ||| Sbjct 4143 ATCCAGAGGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGG 4084 Query 149229 AGGTTGAGCACGCTGAATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCC 149288 |||| ||| | ||| ||||| |||||||||||||| | ||| | |||| ||||||| Sbjct 4083 AGGTCGAGGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCC 4024 Query 149289 TTGCGCTTG---CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATA 149345 ||||||| |||||||||||||||| |||| | ||||||| |||| || | ||| Sbjct 4023 GGGCGCTTGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATG 3964 Query 149346 GGTTCAATGCCACTGGCAGT-GCCGTTAGTAGAGCTAATG--CGACTGCCGCGCGCTCGC 149402 || ||||| | | ||| |||||| || | ||| ||| |||| ||| || Sbjct 3963 GGGATGATGCCGTTCG-AGTAGCCGTTCGTGCCGGCGATGTACGA--GCCGGTCGCGCGG 3907 Query 149403 ACTTTGTGCACGTTGACGCCGATGCCGCCG-CCGTACTTTGAGATGGCCGCGCA-GTCGC 149460 | ||||| | || |||||||||||| |||| ||| |||||| |||||| ||| Sbjct 3906 ATGTTGTGGATCGAGAGACCGATGCCGCCGGCCGT-CTTGGAGATGAGCGCGCACGTCTT 3848 Query 149461 CGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGC 149520 |||||| ||||||||||||||| |||| |||||| || | || |||||||| Sbjct 3847 -GAGCGTGTCGTAGATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACG 3789 Query 149521 ACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATT 149580 | | ||||| |||||||||| ||| | || || |||||| ||||| || Sbjct 3788 AGAGCTGCGGGTGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACC 3729 Query 149581 TCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTA 149640 || ||| | | ||||| ||||| | |||| || ||||| ||||| |||||||| | Sbjct 3728 GCTCCGACATGAGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGA 3669 Query 149641 TGGCGACGCGCATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 ||||| ||||| ||||| |||||||||||||| ||||| ||| Sbjct 3668 CCGCGACACGCATGAGCATGTGCTGCGGTCGCTCGGCCACCTTG 3625 Score = 143 bits (158), Expect = 3e-29 Identities = 298/444 (67%), Gaps = 0/444 (0%) Strand=Plus/Minus Query 148052 CGACTGGCTCTGGTCAATGAACGCGCCACGGTCAGCGGCCATTTCAATGAGTCGCTTTAT 148111 |||||| |||||| |||||||| || ||||| |||| | || |||| ||| Sbjct 5416 CGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGACGACCTTCTG 5357 Query 148112 CTTCATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCG 148171 | |||||||| |||||||||| | ||||||| | ||| || || ||| || | Sbjct 5356 CGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACCGGGGACGTT 5297 Query 148172 CTGCACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAG 148231 ||| | ||||||| |||||| | ||| || ||| |||| | | ||| | | Sbjct 5296 CTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCACAGGCCGCG 5237 Query 148232 CTCGATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCG 148291 |||| ||||| || || | | || || || || |||||||||||||| || || Sbjct 5236 GTCGACGAGGTCGCGGAGGAGCCAGGGGTTGACGACTTGGAACTCGCCGGCGAGGACACG 5177 Query 148292 CCGCAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGC 148351 || || | |||| ||| |||| || |||| ||||||| ||| | ||||| Sbjct 5176 GCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCCAAGGATCTGACT 5117 Query 148352 GGTCGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTAT 148411 ||||| || || ||||| ||| | ||||||||||| | ||| | | || Sbjct 5116 GGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCCGTGCTGCGCAAT 5057 Query 148412 TTTGCGCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTA 148471 || ||||| | ||||||||||| || || ||| || |||||||||| |||||| Sbjct 5056 CTTCTCCTTCAACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTTCCACAGGTCGTA 4997 Query 148472 CTGCAGAATGCCGCGGCTAGCGGG 148495 ||||| | |||| |||| ||||| Sbjct 4996 CTGCAAGAGGCCGTGGCTCGCGGG 4973 >seq186 Length=108833 Score = 143 bits (158), Expect = 3e-29 Identities = 154/202 (76%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||| ||||| ||||| || |||||||| | | | | |||| |||||||||||||| Sbjct 60751 GGTCGACTCCTTCTGGATGTTGTAATC--CGAAAGAGTACGACCATCCTCGAGCTGCTTC 60808 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || | ||||||||||||||||||||||| |||||||| ||||| | Sbjct 60809 CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCC 60868 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | || | |||||| | | ||| || |||| ||||| ||| |||||||| || Sbjct 60869 TTGACATTGTCGATCGTGTCCGACGACTCAACCTCGAGGGTGATGGTCTTGCCGGTGAGG 60928 Query 133641 GTTTTTACGAAAATCTGCATGG 133662 || || ||||| |||||||||| Sbjct 60929 GTCTTGACGAAGATCTGCATGG 60950 Score = 109 bits (120), Expect = 5e-19 Identities = 123/163 (75%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| Sbjct 60168 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 60225 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| | || | ||||||||||||||||| ||||| |||||||| ||||| | Sbjct 60226 CCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCCTGAATCTTGGCC 60285 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 |||| | || | |||||| | | ||| || |||| ||||| Sbjct 60286 TTGACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 60328 Score = 96.9 bits (106), Expect = 3e-15 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 |||||||||||||| |||||| | || | |||||||||||||||||||| || |||||| Sbjct 60502 TCCTCGAGCTGCTTCCCCGCGAAGATCAAGCGCTGCTGGTCGGGAGGGATTCCCTCCTTG 60561 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || |||||| ||||| | |||| |||||| | | ||| || |||| ||||| Sbjct 60562 TCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCAGACGACTCAACCTCGAGGGTGA 60619 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| || || || || || |||||||| | |||| |||||| |||||||| || Sbjct 59868 GGTCGATTCCTTTTGAATGTTGTAATCTTGAAGCGTGCGTCCGTCCTCAAGCTGCTTCCC 59927 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | |||||||||||||| |||||||| |||||||| ||||| ||| Sbjct 59928 CGCGAAGATCAAGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTT 59987 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||||| | ||| || |||| ||||| Sbjct 59988 GACGTTGTCGATCGTGTCGGACGACTCGACCTCGAGGGTGA 60028 >seq33 Length=99298 Score = 114 bits (126), Expect = 1e-20 Identities = 96/116 (83%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTG 133520 ||| ||||||||||| || |||||||| | | | | |||| ||||||||||||||| Sbjct 223 GGTCGACTCTTTCTGGATGTTGTAATC--CGAAAGAGTACGACCGTCCTCGAGCTGCTTC 280 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| | ||||| ||||||||||||||||||||||| |||||||| |||||| Sbjct 281 CCCGCGAAGATGAGACGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGGATCTT 336 >seq176 Length=250200 Score = 102 bits (112), Expect = 8e-17 Identities = 96/120 (80%), Gaps = 2/120 (2%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||||||||||||||| |||||| | ||||||||||||||||||||||||||||| ||||| Sbjct 112857 GTCCTCGAGCTGCTTCCCCGCGAACATGAGCCGCTGCTGGTCGGGAGGGATGCCCTCCTT 112916 Query 133565 GTCGGTGATCTTTTGCTTGA-GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 ||| |||||| ||||| | || || | |||| || || || || |||| |||| Sbjct 112917 GTCCTGGATCTTGGCCTTGACGATG-TCGATCGTGCTGGAGGACTTGACATCGAGAGTGA 112975 >seq217 Length=194401 Score = 96.9 bits (106), Expect = 3e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 61187 GGTCGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 61128 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || |||||||| |||||||| |||||| ||| Sbjct 61127 GGCAAAGATGAGGCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 61068 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGA 133623 || | || | |||||| | | ||| || |||| ||||| Sbjct 61067 GACGTTGTCGATCGTGTCCGACGACTCGACCTCGAGGGTGA 61027 >seq222 Length=148624 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||| ||||| ||||| || ||||| || | ||| |||||||||||||||||| Sbjct 94967 GGTCGACTCCTTCTGGATGTTGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCC 95026 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | |||||||||||||| |||||||| |||||||| |||||| ||| Sbjct 95027 CGCGAAGATCAAGCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 95086 Query 133583 GAGCTG 133588 || ||| Sbjct 95087 GACCTG 95092 >seq156 Length=1186 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || || || |||| | |||| | |||||| ||||||||||| Sbjct 229 GTCGACTCCTTCTGAATGTTATAGTCGCTGAGCGTGCGCCCGTCCTCAAGCTGCTTGCCG 288 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || | ||||||||||| || || ||||| |||||||| |||||| |||| Sbjct 289 GCGAAGATCAAGCGCTGCTGGTCAGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 348 Query 133584 A 133584 | Sbjct 349 A 349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483419319523800