Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq145 176 6e-39 seq236 96.9 4e-15 >seq145 Length=5427 Score = 176 bits (194), Expect = 6e-39 Identities = 489/739 (66%), Gaps = 17/739 (2%) Strand=Plus/Minus Query 118830 GCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 118889 || |||||||| |||||| | || | |||||||| |||| || ||| || || | | Sbjct 4371 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 4312 Query 118890 CAGA-CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTA 118948 |||| | || | || || | ||| ||||| || ||||| | ||| ||||| | | Sbjct 4311 CAGAGCTTCTGG-GCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 4253 Query 118949 GAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAA 119008 || | | ||||| || || | |||| ||| || ||||||| | |||||||| Sbjct 4252 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 4193 Query 119009 GAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068 ||| | ||| | || || ||| || |||| |||||||||||| || |||||||| || Sbjct 4192 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 4133 Query 119069 CGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 119128 |||| | || || ||| | || || | || || || || | || | || Sbjct 4132 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 4073 Query 119129 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA-- 119186 || | ||| || ||||||||||| || ||||| | |||| | ||| || Sbjct 4072 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 4013 Query 119187 -CCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACC 119245 || |||||| || || | ||| ||| ||| | || || ||||| || ||||| || Sbjct 4012 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 3953 Query 119246 ATCGGATTGGCCATTTGTCCCC-CGAA-TACGAGACTTATTGGCTCTGACATCGTGGATG 119303 | || | ||| || || || ||| |||||| | | || | || | |||||| Sbjct 3952 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGG--TCGCGCGGATGTTGTGGATC 3895 Query 119304 TGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAG 119363 | ||| || || || ||| ||| ||||| |||||||| | |||| || ||||| Sbjct 3894 GAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAG 3835 Query 119364 ATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTG 119423 || || ||||||||||| |||| | | || ||||||||| ||| | || || Sbjct 3834 ATGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGC 3775 Query 119424 GGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACC-TTGGGACATCTT 119482 || || || ||||||||||| || || | ||||| | || |||| | ||||| Sbjct 3774 GGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGT-AAAGTACCGCTCCGACATGAG 3716 Query 119483 GTCGTAGGTCTCCAAGACGGCGGG---AATGTCTTCCCCGTGAATACCGATCGAGACCCG 119539 || ||| ||||| || ||| | |||||| || ||||| || |||| || ||| || Sbjct 3715 GTTGTACGTCTC---GATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACG 3659 Query 119540 CATAAACATGTATTGGGGT 119558 ||| | ||||| || ||| Sbjct 3658 CATGAGCATGTGCTGCGGT 3640 >seq236 Length=218215 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 12072 GGGAACCTCAACGCCGAGAGGGACTGGGGACATGCCAAGGACTATGTTGAAGCCATGTGG 12131 || |||||| |||| || | ||||||||||| || |||||||| || | ||||||| Sbjct 157970 GGTAACCTCGACGCGAAGCGCGACTGGGGACACGCTCGCGACTATGTCGAGGGCATGTGG 158029 Query 12132 CTCGTACTTCAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCC 12191 | | | || || || || || | ||||| | |||| ||||||| || ||||| ||| || Sbjct 158030 CGCATGCTCCAGCAGGACCAGCCCGACGACTTTGTCCTCGCGACCGGCGAGACCCACCCC 158089 Query 12192 GTCAGGGAGTTCGTTGAG 12209 ||| | |||||||| ||| Sbjct 158090 GTCCGCGAGTTCGTCGAG 158107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618433306042200