Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq145 444 6e-120 seq220 89.7 6e-13 >seq145 Length=5427 Score = 444 bits (492), Expect = 6e-120 Identities = 540/733 (74%), Gaps = 2/733 (0%) Strand=Plus/Minus Query 79170 GGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTC 79229 ||||||||||||| |||| | || | || ||||| ||||| || ||| | | ||| Sbjct 4372 GGCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTA 4313 Query 79230 CCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCGACGTACGTCCGGTA 79289 ||||| | | |||| | | |||| ||||||| | ||| || | | Sbjct 4312 CCAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCTCATACTTCTCGAA 4253 Query 79290 CAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACAT 79349 || ||| ||||| | || || ||||| ||| | ||||| || |||| ||||| | Sbjct 4252 CAGCTCCTTGAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGCAGAA 4193 Query 79350 CAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGC 79409 ||| ||||||| ||| || ||| || ||||||||||||||| || ||||| ||||| Sbjct 4192 GAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGC 4133 Query 79410 CGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 ||| | |||||| || | |||||| | ||| |||||| || || ||||| || Sbjct 4132 AAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAA 4073 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 || | ||||||||||||||||||||| || ||||||||||||| ||| ||||||| Sbjct 4072 CTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTT 4013 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||||||||||| |||||| || || ||||||||| | || ||||||||||| | |||||| Sbjct 4012 GCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCC 3953 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || | | ||||||||| ||| ||| | ||| |||| || ||||| | | | | Sbjct 3952 GTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTT-GTGGATCG 3894 Query 79650 -GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGA 79708 || |||||||| |||| | |||||||||| |||||||| ||||||||| ||||||| Sbjct 3893 AGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGTAGA 3834 Query 79709 TGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGT 79768 ||||||||||||||||||||||||| | ||| |||||||| ||| | ||| |||| Sbjct 3833 TGCCCTCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCG 3774 Query 79769 TCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGAT 79828 ||| |||||||||||||| ||||||| |||||||| ||| || | ||| || | Sbjct 3773 GCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGT 3714 Query 79829 CGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 ||||||||| | ||||| | ||||||||||||||||||||||||||| ||||||| Sbjct 3713 TGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGCATGA 3654 Query 79889 AGAGGTACTGGGG 79901 | || ||| || Sbjct 3653 GCATGTGCTGCGG 3641 Score = 387 bits (428), Expect = 2e-102 Identities = 533/740 (72%), Gaps = 4/740 (1%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| ||||||||||||||||| ||||||||| | ||| | Sbjct 3641 CCGCAGCACATGCTCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCG 3700 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 |||||| ||| |||| ||| || || ||| |||||||| ||||||| || ||| Sbjct 3701 ATCGAGACGTACAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTC 3760 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 |||||||| ||| |||||||| | ||| || ||||| || | |||||||| ||| Sbjct 3761 AACGCCGGCACGCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGAC 3820 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 || |||||||||||||| ||||||||| |||||||| |||||||||| | |||| Sbjct 3821 TCGATCGAGGGCATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGC 3880 Query 19343 GGTATCGGGATC-CACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAA 19401 || ||||| || | | | | || ||||| ||| || | ||| || ||||| Sbjct 3881 GGCATCGGTCTCTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAA 3939 Query 19402 CGGAGTAGCCGA-CGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACG 19460 ||| || ||| ||| ||| |||| ||||||||||| | ||||||||| || | |||| Sbjct 3940 CGGC-TACTCGAACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACG 3998 Query 19461 TCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACG 19520 || ||||||| ||| ||| ||| |||| |||||||||||||||||||||| ||||||| Sbjct 3999 TCGACCAGGGCGGCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACG 4058 Query 19521 CGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTC 19580 | ||| || | || |||||||| || ||| |||||| || | |||||| | ||| | Sbjct 4059 CCGACATCTTCGAGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGC 4118 Query 19581 GCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACG 19640 ||||| | ||| ||| | |||||||| ||||| ||||||||| || ||| || ||| Sbjct 4119 GCGACTTGTTCTTTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACG 4178 Query 19641 AAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGG 19700 || |||| ||| | ||||| ||| || ||||| | ||| ||||||||||| | Sbjct 4179 GCGACTGGCCCCTCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACG 4238 Query 19701 CGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGG 19760 |||||| ||| ||| | || || | |||| || |||| | | | Sbjct 4239 AGTTCAAGGAGCTGTTCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCG 4298 Query 19761 CCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGT 19820 ||| | | ||||| || | ||||| | |||||||||||| |||| || | |||| Sbjct 4299 CCCAGAAGCTCTGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGC 4358 Query 19821 GCTACAAGGACGCCGCGAAC 19840 ||||||||||||||| ||| Sbjct 4359 TCTACAAGGACGCCGCCAAC 4378 Score = 141 bits (156), Expect = 1e-28 Identities = 489/758 (65%), Gaps = 56/758 (7%) Strand=Plus/Minus Query 78282 GATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGAC 78341 || |||||||||||| |||||||||||| |||| ||||||||||| | | ||||||||| Sbjct 5425 GACGTTGAGCGACTGCGACTGGTCGATGAACGCTCCGCGGTCGGCGGAGAGGTCGATGAC 5366 Query 78342 CGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTC 78401 ||| |||| |||||||| | ||| ||| ||| ||| ||||| || |||| | Sbjct 5365 GACCTTCTGCGAGATCTCCCACACCGTCTTGTAGATGCGCTTGAGCTCATCAGGGATACC 5306 Query 78402 CAGCGCTTGTACGCTCCCACCGGCTCGCACAATT-TCAT--TCTTAATTTGAGGGTTCCA 78458 | | | | || ||| || | || || | |||| || |||||| Sbjct 5305 GGGGACGTTCTGGATCGAGCCGTTGTGCGCGATGATCGTGTTCTTCATCGCGTCGTTCCA 5246 Query 78459 GCGATTGATCTTCTGAAGATCCCGGACCAGGTGCCGGTTAATCATGAC---GAACTCGCC 78515 | | | || || |||| || ||| | | | ||| ||||||||| Sbjct 5245 CAGGCCGCGGTCGACGAGGTCGCGGA---GGAGCCAGGGGTTGACGACTTGGAACTCGCC 5189 Query 78516 GGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCC 78575 ||| ||| ||||| ||||||||||| ||||||||||||||| ||||||||| || Sbjct 5188 GGCGAGGACACGGCGGGTGTAGATGTTGGACGTGTACGGCTCGAACGCCTCGTTGAAGCC 5129 Query 78576 CATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACC 78635 | |||||| |||||| ||||||||||| || ||| | || || || || | || Sbjct 5128 AAGGATCTGACTGGTCGACGCGGTCGGCATCGGCGCGCAGACGAGCGAGTTGCGGATGCC 5069 Query 78636 ATGCGTCTTGATCTCGACCTT----TAGGCC--GTCCCAAAATTCATTCGCCGCGATCCC 78689 ||| | |||| |||| | |||| |||||| | || ||| || || Sbjct 5068 GTGCTGCGCAATCTTCTCCTTCAACTCGGCCCAGTCCCACAGGTCCGTCGGCGTGACGTT 5009 Query 78690 CCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGA---------CCCCTTGAACGT 78740 ||||| ||| || | || || | | ||| ||||| | ||||| ||| Sbjct 5008 CCACAGGTCGTACTGCAAGAGGCCGTGGCTCGCGGGCGAGCCGCCGTTCTCCTTGTACGA 4949 Query 78741 CTCGTAAGATCCCTCCTC------CTTGGCGA----GT--TCGC---------------A 78773 ||| | || ||| | ||||| || |||| | Sbjct 4948 GGGGTACCAGCCGGGCTCGCCGGGGTGGGCGATGGCGTAGTCGCGGGCCATGTCGCACGA 4889 Query 78774 TGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGC 78833 ||||||| | || |||||||| | | ||||||||| |||||| | |||||| Sbjct 4888 CGACTCGATC---GCGGCGTGGTAGATCGTCTCGAAGATCTGGACGTTGAGGTGGCGCGC 4832 Query 78834 CTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCC 78893 || || | |||||||| || | ||| ||||||| | ||||| || ||||| || || Sbjct 4831 CTCGGGCGAGTCGAACGGCAGACGGAGGGCCATGAAGGCGTCGGCGAGACCCTGCACACC 4772 Query 78894 GATAGCGATCGGTCGGTGGCGCATGTTGCT-CTTTCGGGCCGCCTCGGTCGGGTAAAAGT 78952 |||| ||||||| |||||||| | |||||| | || |||| ||| | ||||| ||| Sbjct 4771 GATACCGATCGGGCGGTGGCGGAAGTTGCTGCGCTC-GGCCTCCTTGACGGGGTAGTAGT 4713 Query 78953 TCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACC 78990 | ||||||| |||||||| ||| |||||||||| Sbjct 4712 TGACGTCGATGATGCGGTTCAAGTTGTACGTGACGACC 4675 Score = 134 bits (148), Expect = 2e-26 Identities = 488/761 (64%), Gaps = 62/761 (8%) Strand=Plus/Plus Query 20014 GGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCGAGGCGGC 20073 |||||||||| || |||| ||| ||||||| |||| ||||| | ||| ||| Sbjct 4675 GGTCGTCACGTACAACTTGAACCGCATCATCGACGTCAACTACTACCCCGTCAAGGAGGC 4734 Query 20074 ---GCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130 ||||| || | |||||||| ||||||| ||||| || ||||| || ||||| Sbjct 4735 CGAGCGCAGC---AACTTCCGCCACCGCCCGATCGGTATCGGTGTGCAGGGTCTCGCCGA 4791 Query 20131 CGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGG 20190 || |||||| ||| | || | |||||| ||| |||||||| | |||||| Sbjct 4792 CGCCTTCATGGCCCTCCGTCTGCCGTTCGACTCGCCCGAGGCGCGCCACCTCAACGTCCA 4851 Query 20191 CATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGA--------------A 20236 ||||||||| | | |||||||| || || | |||||||| | Sbjct 4852 GATCTTCGAGACGATCTACCACGCCGCGATCGAGTCGTCGTGCGACATGGCCCGCGACTA 4911 Query 20237 C----TCGCCAAA------GAGGACGGCCCGTACGAGACGTTCAAGGGG---------TC 20277 | ||||| | ||| |||| |||| ||| ||||| | || Sbjct 4912 CGCCATCGCCCACCCCGGCGAGCCCGGCTGGTACCCCTCGTACAAGGAGAACGGCGGCTC 4971 Query 20278 GCCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTG 20337 ||||||| | | || || | ||| ||| ||||| |||||| || || | || Sbjct 4972 GCCCGCGAGCCACGGCCTCTTGCAGTACGACCTGTGGAACGTCACGCCGACGGACCTGTG 5031 Query 20338 GAGC---GCCC---TCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGT 20391 | | ||| | |||| |||| | ||||| | ||||||||| | || Sbjct 5032 GGACTGGGCCGAGTTGAAGGAGAAGATTGCGCAGCACGGCATCCGCAACTCGCTCGTCTG 5091 Query 20392 CGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCC 20451 |||||| ||||||||||| |||||| |||||| | || ||||||||| |||||||| Sbjct 5092 CGCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTTGGCTTCAACGAGGCGTTCGAGCC 5151 Query 20452 GTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAA 20511 ||||||| ||||||||||| || ||| || ||||| |||||| | || || Sbjct 5152 GTACACGTCCAACATCTACACCCGCCGTGTCCTCGCCGGCGAGTTCCAAGTCGTCAA--- 5208 Query 20512 GCACCTGG----TCCGCGACTTGCAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATG 20567 | ||||| |||||||| | | || ||||| | || ||||| Sbjct 5209 -CCCCTGGCTCCTCCGCGACCTCGTCGACCGCGGCCTGTGGAACGACGCGATGAAGAACA 5267 Query 20568 AAATTGTC-CGAGC--CGGCGGGAGCGTCCAG---GCATTGGATATCCCCCAGAACCTCA 20621 || || || | |||| || ||||| | | |||||| | | |||| Sbjct 5268 CGATCATCGCGCACAACGGCTCGA---TCCAGAACGTCCCCGGTATCCCTGATGAGCTCA 5324 Query 20622 AGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCCG 20681 || ||| |||| ||| || ||||| ||| | |||||| | |||||||| | | |||| Sbjct 5325 AGCGCATCTACAAGACGGTGTGGGAGATCTCGCAGAAGGTCGTCATCGACCTCTCCGCCG 5384 Query 20682 ATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTC 20722 | ||||| || | |||||||||||| ||||||||||| ||| Sbjct 5385 ACCGCGGAGCGTTCATCGACCAGTCGCAGTCGCTCAACGTC 5425 >seq220 Length=125865 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 20703 AGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGC 20762 |||| ||||||||||| ||| | | | |||| | ||||| |||| | || |||| Sbjct 27 AGTCGCAGTCGCTCAACGTCCACCTCTCGTCGCCGACCATGGCGCAGCTCACGTCGATGC 86 Query 20763 ATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACCCGAGCC 20821 | | ||||||||| | ||||| |||||||||||||||||||| || || ||||| ||| Sbjct 87 ACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGCATGTACTACCTCCGTACCCGCGCC 145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 78183 GGCGCGTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTG 78242 |||||| || || | |||||||||||||||||||||||||||||||| ||||| | ||| Sbjct 145 GGCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTG 86 Query 78243 CATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACT 78301 ||| || |||| |||| |||| | | | || |||||||||||| |||| Sbjct 85 CATCGACGTGAGCTGCGCCATGGTCGGCGACGAGAGGTGGACGTTGAGCGACTGCGACT 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548523120142800