Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq145 358 7e-94 seq198 132 5e-26 seq236 107 2e-18 seq57 107 2e-18 seq220 87.8 2e-12 >seq145 Length=5427 Score = 358 bits (396), Expect = 7e-94 Identities = 515/719 (72%), Gaps = 8/719 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC--TACACGCGTGTCCGTGAGACGTA 53250 ||||||| ||||| | || |||||||| |||||| | |||| | || ||||||| Sbjct 3654 TCATGCGTGTCGCGGTCGGCATCCACGGCGACGACATTGAGCGCGCGATCG--AGACGTA 3711 Query 53251 CGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTAC 53310 | || | ||| | |||||||||||||||| |||| || || |||||||| || || Sbjct 3712 CAACCTCATGTCGGAGCGGTACTTTACGCACGCCTCGCCGACGCTCTTCAACGCCGGCAC 3771 Query 53311 GAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGG 53370 | ||||| ||| | ||| |||||||| || |||||||||| ||||||||||| || Sbjct 3772 GCCGCACCCGCAGCTCTCGTCGTGCTTCCTCGTCACGATGAAGGACGACTCGATCGAGGG 3831 Query 53371 CATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT 53430 ||||||||| ||||||||| ||| || | |||||||||| | | || || |||||| | Sbjct 3832 CATCTACGACACGCTCAAGACGTGCGCGCTCATCTCCAAGACGGCCGGCGGCATCGGTCT 3891 Query 53431 C-CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | | | | | ||| |||| |||| |||| | ||| || ||||||||| | | Sbjct 3892 CTCGATCCAC-AACATCCGCGCGACCGGCTCGTACATCGCCGGCACGAACGGCTACTCGA 3950 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||||||||| | ||||||||| || || |||||| ||||||| | Sbjct 3951 ACGGCATCATCCCCATGCTCCGCGTGTACAACAACACCGCGCGCTACGTCGACCAGGGCG 4010 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | |||||| ||| ||||||||||||||||||||||||||||||||||||| | | Sbjct 4011 GCAACAAGCGCCCGGGCGCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTCG 4070 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| ||||| || || ||| || || | || ||| | ||| || ||| |||| Sbjct 4071 AGTTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCGCGCGACTTGTTCT 4130 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 || || |||||||| |||||||||||| | || ||| || ||| || ||| || Sbjct 4131 TTGCCCTCTGGATTCCCGACCTCTTCATGGAGCGTGTCGAGCAGAACGGCGACTGGCCCC 4190 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | | ||||| |||| ||||||||||| | |||||||| || ||||| || ||| Sbjct 4191 TCTTCTGCCCTGCCGAGGCACCCGGCCTCCACGAGGTCTACGGCGACGAGTTCAAGGAGC 4250 Query 53790 TGTATCG-GACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTA 53848 ||| ||| || ||| | |||| ||| |||| | | || | || | Sbjct 4251 TGT-TCGAGAAGTATGAGAAGGAGGGTCGCGCCAAGCGCACCATTCCCGCCCAGAAGCTC 4309 Query 53849 TGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGA 53907 ||| | || |||||| || |||||| |||||||| | || | |||| ||||||||| Sbjct 4310 TGGTACGCCATCCTCGAGGCCCAGGTCGAGACGGGCAACCCCTTCATGCTCTACAAGGA 4368 Score = 109 bits (120), Expect = 6e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| | |||||||| || || ||||| ||||| ||||||||||| ||||||| | Sbjct 5069 GGCATCCGCAACTCGCTCGTCTGCGCGCCGATGCCGACCGCGTCGACCAGTCAGATCCTT 5128 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCA 55597 ||| ||||||||||||||||||||||||| ||||||||||| ||||| ||| || Sbjct 5129 GGCTTCAACGAGGCGTTCGAGCCGTACACGTCCAACATCTACACCCGCCGTGTCCTCGCC 5188 Query 55598 GGTGAGTT 55605 || ||||| Sbjct 5189 GGCGAGTT 5196 >seq198 Length=50111 Score = 132 bits (146), Expect = 5e-26 Identities = 138/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| |||| ||||||||| |||||||| ||| || ||||| || ||||| Sbjct 13724 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 13783 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || || ||||| | ||||| ||||||| ||| ||||| ||||| || | || Sbjct 13784 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 13843 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 ||||||||||| || || || |||||||| ||||||| ||||||| |||||| ||| Sbjct 13844 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 13903 Query 152209 G 152209 | Sbjct 13904 G 13904 Score = 120 bits (132), Expect = 3e-22 Identities = 144/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | ||| || || |||||||| || ||||||||||||||| || Sbjct 13724 GTGAAGATGTAACGGGCGCTGGCCGCGTCCTTGCCGCCTTGAAGACGCGTACCGAACTGG 13783 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | | ||| | ||||||| ||| || ||||| || || | | ||| Sbjct 13784 CCGTTCGGGTCGAGCACGTTGATGTTGTTGCTGCCGACGAAGTTCTGCGCGAGGCCGACG 13843 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || ||||| || || || ||||| ||||||| ||||||| | ||||||| Sbjct 13844 ATCGTGCCCTGGAGCGAGGCGTCGCCGTGGTGGTACGCCGAGTGCTCCGAGATGTAGCCC 13903 Query 117485 GCCAGCTGAGCCACCT 117500 | ||||| | |||| Sbjct 13904 GAAAGCTGGCCGACCT 13919 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/107 (79%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTG--CTCCTCGTCG 119140 |||||| |||||||| ||||| |||||||| ||||| ||| | || ||| |||||| Sbjct 16034 GTTGGCGAGCTTGGCGCCGTAGCCGTTCCGTCCACCCGTC--GTCTTGGCCTCGTCGTCG 16091 Query 119141 TTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 | |||||| ||| ||| | |||| |||||||||||||||||||| Sbjct 16092 TCGTAGTTCGAGGAGGTGAGGAGGTTGCCAAAGATGAGCTCGGGGAT 16138 >seq236 Length=218215 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||||| | ||| ||||| || ||||| | |||||||| || || | ||| Sbjct 158100 AACTCGCGGACGGGGTGGGTCTCGCCGGTCGCGAGGACAAAGTCGTCGGGCTGGTCCTGC 158041 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCA 159063 ||||||||| |||||||| ||||||| || || | ||||| |||||||||||||| || Sbjct 158040 TGGAGCATGCGCCACATGCCCTCGACATAGTCGCGAGCGTGTCCCCAGTCGCGCTTCGCG 157981 Query 159064 TCCATGTTCCCGAG 159077 || | ||| ||||| Sbjct 157980 TCGAGGTTACCGAG 157967 >seq57 Length=416566 Score = 107 bits (118), Expect = 2e-18 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 158943 AAACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGC-T 159001 ||||||||||| | ||||||||| || || || | ||| |||| || || | || | | Sbjct 206235 AAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTCCGG-CTGGTCTT 206293 Query 159002 GTTGGAGCATGAGCCACATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGG 159061 | || | |||| |||||||| | |||||||| || ||||||| |||||||||||||||| Sbjct 206294 GCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCCAGTCGCGCTTGG 206353 Query 159062 CATCCATGTTCCCGAG 159077 |||| | ||| ||||| Sbjct 206354 CATCGAGGTTGCCGAG 206369 Score = 102 bits (112), Expect = 9e-17 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||||| |||||| |||| | ||||||||| || || | | || | || || Sbjct 206223 CGCCTTCTCGACAAACTCGCGGACGGGGTGCGTCTCGCCGGTTGCGAGGACATAGTCGTC 206282 Query 124541 GGGAATCGACT-GCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCC 124599 || | | || |||||||||| |||||||| ||| ||||||||| ||||| |||| Sbjct 206283 CGGC-TGGTCTTGCTGCAACATGCGCCACATGCCTTCGACGTAGTCGCGCGCGTGGCCCC 206341 Query 124600 AGTCGCGCTTGGCATCCAGGTTTCCGAG 124627 |||||||||||||||| ||||| ||||| Sbjct 206342 AGTCGCGCTTGGCATCGAGGTTGCCGAG 206369 >seq220 Length=125865 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 55865 TCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTGCGGACC 55924 ||||||||||| ||||| ||||||||||| ||||||||||| |||||||| || || ||| Sbjct 80 TCGATGCACTTCTACGGCTGGAAGAAGGGTCTCAAGACGGGCATGTACTACCTCCGTACC 139 Query 55925 CGCGCC 55930 |||||| Sbjct 140 CGCGCC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547214324151000