Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05-
06] 245 sequences; 20,278,264 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq145 203 4e-47
seq186 176 5e-39
seq198 165 9e-36
seq176 125 8e-24
seq33 116 4e-21
seq222 111 2e-19
seq156 102 9e-17
seq217 98.7 1e-15
seq220 86.0 7e-12
>seq145
Length=5427
Score = 203 bits (224), Expect = 4e-47
Identities = 491/737 (67%), Gaps = 15/737 (2%)
Strand=Plus/Minus
Query 81022 GCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCC 81081
|||||||||||| |||| | ||| | || ||||||||||| | || ||||||||||| |
Sbjct 4371 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGATGGCGTAC 4312
Query 81082 CAAATCTC----GCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGC 81137
|| | || ||| | | | | | | ||| | ||||| ||||||| |
Sbjct 4311 CAGAGCTTCTGGGCGGGAATGGTGCGCTTGGCGCGACCCTCCTTCT----CATACTTCTC 4256
Query 81138 GTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGC 81196
| | |||| | | ||||| | | |||| | || |||| | || |||| |||||
Sbjct 4255 GAACAGCTCCTT-GAACTCGTCGCCGTAGACCTCGTGGAGGCCGGGTGCCTCGGCAGGGC 4197
Query 81197 ACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGA 81256
| | ||| |||||||| || | ||| ||| || |||||| ||| || |||||||
Sbjct 4196 AGAAGAGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGA 4137
Query 81257 GGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGA 81316
|||| ||||| |||||| ||| ||||||| | || ||||| ||| | ||||
Sbjct 4136 GGGCAAAGAACAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGA 4077
Query 81317 GAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG-- 81374
| || || | |||||| || ||||| ||||| || || | ||||| || ||| |||
Sbjct 4076 GGAACTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCT 4017
Query 81375 -ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGA 81433
||| ||||||| |||||| || || || ||| | || || | ||| |||||||
Sbjct 4016 TGTTGCCGCCCTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGA 3957
Query 81434 TACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGA 81493
| || | || | |||||||| || |||| ||| || | ||||| | ||| ||
Sbjct 3956 TGCCGTTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGA 3897
Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553
| || ||||||||||| || | | ||| || || | || ||| || | || || |
Sbjct 3896 TCGAGAGACCGATGCCGCCGGCCGTCTTGGAGATGAGCGCGCACGTCTTGAGCGTGTCGT 3837
Query 81554 AAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612
| || |||||||| || | ||||| || | | | ||| || || | ||| |||
Sbjct 3836 AGATGCCCTCGATCGAGTCGTCCTTCATCGTGACG-AGGAAGCACGACGAGAGCTGCGGG 3778
Query 81613 CTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATC 81672
| |||||| ||||| || || || | ||||| | || || || | |||||
Sbjct 3777 TGCGGCGTGCCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATG 3718
Query 81673 AGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGC 81732
|||| || || || | |||| ||| ||||| ||||| || |||| || ||||||
Sbjct 3717 AGGTTGTACGTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACACGC 3658
Query 81733 ATAAACATGTACTGGGG 81749
|| | ||||| ||| ||
Sbjct 3657 ATGAGCATGTGCTGCGG 3641
>seq186
Length=108833
Score = 176 bits (194), Expect = 5e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || ||||||||||| || || || |||||||||||
Sbjct 60948 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCGTCG 60889
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||||| || ||||||||||||||||| || ||||| ||||||
Sbjct 60888 GACACGATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATCCCTCCCGACCAG 60829
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||||| | || || || || ||||| |||||||||| |||||| || | || || ||
Sbjct 60828 CAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGATGGTCGTACTCTTTCGGATTACAAC 60769
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || ||||| || || ||||||| ||||| ||
Sbjct 60768 ATCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGTCTCCGCGGAGG 60722
Score = 150 bits (166), Expect = 2e-31
Identities = 148/191 (77%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 27442 ATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGAC 27501
|| || || ||||||||||| ||| | |||| || | ||||| || || ||||||
Sbjct 60620 ATCACCCTCGAGGTTGAGTCGTCTGACACGATTGACAACGTCAAGGCCAAGATCCAGGAC 60561
Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561
||||||||||| ||||| ||||||||||| | || || || || ||||| |||||||||
Sbjct 60560 AAGGAGGGAATCCCTCCCGACCAGCAGCGCTTGATCTTCGCGGGGAAGCAGCTCGAGGAT 60501
Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621
| |||||| || | |||||||| ||||| ||||| || || ||||| || || |||||
Sbjct 60500 GGTCGTACTCTTTCGGACTATAACGTCCAGAAGGAGTCGACCCTTCACCTCGTGCTGCGT 60441
Query 27622 CTTCGCGGTGG 27632
|| ||||| ||
Sbjct 60440 CTCCGCGGAGG 60430
Score = 116 bits (128), Expect = 4e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || ||||||||||||||||| |||||||| ||||||||||| | || || ||
Sbjct 60287 AAGGCCAAGATTCAGGACAAGGAGGGCATTCCTCCCGACCAGCAGCGCTTGATCTTCGCG 60228
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | |||||| || | || || || |||| || || || ||
Sbjct 60227 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 60168
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || ||||||| ||||| ||
Sbjct 60167 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 60139
Score = 100 bits (110), Expect = 3e-16
Identities = 112/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || ||||||||||||||||| || || || ||||||||||| | || || ||
Sbjct 59987 AAGGCCAAGATTCAGGACAAGGAGGGCATCCCGCCCGACCAGCAGCGCTTGATCTTCGCG 59928
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| || ||||| | || || || ||| || || | ||||||||||| ||
Sbjct 59927 GGGAAGCAGCTTGAGGACGGACGCACGCTTCAAGATTACAACATTCAAAAGGAATCGACC 59868
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|| || || || ||| | | |||||||||
Sbjct 59867 CTGCACCTCGTTTTGAGGTTGCGCGGTGGA 59838
>seq198
Length=50111
Score = 165 bits (182), Expect = 9e-36
Identities = 211/289 (73%), Gaps = 4/289 (1%)
Strand=Plus/Minus
Query 32054 AGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGT 32113
|||| | ||||| ||||||||| | | ||||| |||| || ||||||||||| || |
Sbjct 13919 AGGTCGGCCAGCTTTCGGGCTACATCTCGGAGCACTCGGCGTACCACCACGGCGACGCCT 13860
Query 32114 CGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACT 32173
||||||||||||| || ||| ||| || |||||||| ||||| || ||| | |||
Sbjct 13859 CGCTCCAGGGCACGATCGTCGGCCTCGCGCAGAACTTCGTCGGCAGCAACAACATCAACG 13800
Query 32174 TACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCT 32233
| ||||| || || ||||| || || || || || |||||||| || || |||
Sbjct 13799 TGCTCGACCCGAACGGCCAGTTCGGTACGCGTCTTCAAGGCGGCAAGGACGCGGCCAGCG 13740
Query 32234 CCCGTTACATCTTCAC--CCGTCTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGA 32291
|||||||||||||||| |||| |||| | ||||||| | | ||| ||||||||||
Sbjct 13739 CCCGTTACATCTTCACAAACGTCGCGCAGAT--CACGCGCACGCTCTTCCACCCGTCGGA 13682
Query 32292 CGATGCGGTGCTCAAGTACAATTTTGATGACGGTCAGCGGGTCGAGCCG 32340
||| || | ||| | ||| |||||||| ||| | ||||||||
Sbjct 13681 CGACGCCATCCTCGACTACCTCAACGATGACGGGCAGAGCATCGAGCCG 13633
Score = 82.4 bits (90), Expect = 9e-11
Identities = 87/113 (77%), Gaps = 4/113 (4%)
Strand=Plus/Minus
Query 30361 ATCTGGATCCCCGAACTCATTTTTGGGCACCTTTTGACAAGCTCCAACTACAACGACGAG 30420
|||| |||||||| ||||| ||||| |||| | || ||| |||||| |||||||
Sbjct 16144 ATCTACATCCCCGAGCTCATCTTTGGCAACCTCCTCACCTCCTCGAACTACGACGACGAC 16085
Query 30421 GAG--CAGCGCGTGACGGGTGGACGAAATGGCTACGGTGCAAAGCTCGCCAAC 30471
||| || || ||||||||||| || |||||||| || ||||||||||||
Sbjct 16084 GAGGCCAAGACG--ACGGGTGGACGGAACGGCTACGGCGCCAAGCTCGCCAAC 16034
>seq176
Length=250200
Score = 125 bits (138), Expect = 8e-24
Identities = 117/149 (79%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || ||||| ||||||||||| || || || ||
Sbjct 112934 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGGCTCATGTTCGCG 112875
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| || || || | |||||| || || |||| ||| || ||
Sbjct 112874 GGGAAGCAGCTCGAGGACAGCCGCACGCTCGAAGACTACAAGGTTCAAAGGGATTCGACC 112815
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||||||| |||||||| || ||||| ||
Sbjct 112814 CTTCATCTCGTCTTGCGCCTACGCGGCGG 112786
>seq33
Length=99298
Score = 116 bits (128), Expect = 4e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || ||||| |||||||||||||| || || ||
Sbjct 342 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAGCAGCGTCTCATCTTCGCG 283
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | |||||| || | || || || |||| || || || ||
Sbjct 282 GGGAAGCAGCTCGAGGACGGTCGTACTCTTTCGGATTACAACATCCAGAAAGAGTCGACC 223
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || ||||||| ||||| ||
Sbjct 222 CTCCACCTCGTGCTGCGTCTCCGCGGAGG 194
>seq222
Length=148624
Score = 111 bits (122), Expect = 2e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || || || ||||||||||| | || || ||
Sbjct 95086 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGCTTGATCTTCGCG 95027
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | || || || | ||||| || |||| ||||| || ||
Sbjct 95026 GGCAAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTACAACATCCAGAAGGAGTCGACC 94967
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || ||| | ||||||||||||||
Sbjct 94966 CTCCACCTCGTCCTCCGTCTTCGCGGTGG 94938
>seq156
Length=1186
Score = 102 bits (112), Expect = 9e-17
Identities = 114/150 (76%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| ||||| || ||||||||||| | || || ||
Sbjct 347 AAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCTGACCAGCAGCGCTTGATCTTCGCC 288
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCAC 27602
|| ||||| || ||||| | || || || ||| |||||||| | || ||||| || ||
Sbjct 287 GGCAAGCAGCTTGAGGACGGGCGCACGCTCAGC-GACTATAACATTCAGAAGGAGTCGAC 229
Query 27603 TCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || || | ||||| ||||||||
Sbjct 228 GCTGCACCTGGTGCTTCGTCTCCGCGGTGG 199
>seq217
Length=194401
Score = 98.7 bits (108), Expect = 1e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||||| || || |||||||||||||| || || || ||||||||||| || || |||||
Sbjct 61068 AAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCAGCGCCTCATCTTTGCC 61127
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| ||||| |||||||| | || || || | ||||| || | || ||||| || ||
Sbjct 61128 GGCAAGCAGCTCGAGGACGGCCGCACTCTTTCTGACTACAACATTCAGAAGGAGTCGACC 61187
Query 27604 CTTCATCTAGTC 27615
||||| || |||
Sbjct 61188 CTTCACCTCGTC 61199
>seq220
Length=125865
Score = 86.0 bits (94), Expect = 7e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091
|| || || || || |||||||||||||||||||| ||||||||||||||||| | ||||
Sbjct 144 GCGCGGGTACGGAGGTAGTACATGCCCGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGC 85
Query 80092 ATAGAACTGAGCTTCGC 80108
|| || |||||| |||
Sbjct 84 ATCGACGTGAGCTGCGC 68
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570308653424400
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