Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F000988805.1_202015-05- 06] 245 sequences; 20,278,264 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq204 111 1e-19 >seq204 Length=515223 Score = 111 bits (122), Expect = 1e-19 Identities = 133/178 (75%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 29857 CCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAG 29916 || ||||||||| ||||| ||||| || |||| || ||||||||||| ||||| || || Sbjct 273016 CCGCTCGAGCTGCGTCTTGAGCGGCTCGACGTGGTCGAGGTAGACGTGCGCGTCGCCGAG 272957 Query 29917 GTTGTGGACAAACTCTCCCGGT-TCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGA 29975 | | ||| ||||| |||| || | |||||||| | || ||||||| ||| |||| Sbjct 272956 TTGGAGGATGAACTCATGCGGTATCGTG-TCGGTGACGAGGGCGATCATGTGCGTCAGGA 272898 Query 29976 GAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTA 30033 | | ||| ||||||||| ||||| || ||||| || | ||| | || | |||||| Sbjct 272897 GGGCGTACGAGGCGATGTTGAAGGGCACGCCGAGGCCGAGGTCGGCAGAGCGCTGGTA 272840 Score = 109 bits (120), Expect = 4e-19 Identities = 144/197 (73%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 30261 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAA 30320 ||||||| || ||||||| || ||| |||||| ||||| ||||| | | ||| | | Sbjct 272455 ACCCGTAGACGGGTCCCAAATCACCCACTTCCCGGTGCTGCAAGCCGCGCGAGTCGAGGA 272396 Query 30321 AGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGT 30380 | |||| | |||||| | ||||||||||| || |||||||| | | | | || |||| Sbjct 272395 ACTCTCGGCTGCCGTTGCCATCCCAGATCTTGACGCCCTTCTCCGCCAACACCTTCGAGT 272336 Query 30381 TTGTGGA-CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTC 30439 ||| | ||||| ||| ||||||| ||||||||| | || | | | ||||||| | Sbjct 272335 CGGTGCATCCCTC-GACAAACCACAACAGCTCCTCGATGATGCCGCGCGAAAAGACGCGT 272277 Query 30440 TTGGTCGTGAGGAGGGG 30456 |||||||| | ||| || Sbjct 272276 TTGGTCGTCAAGAGCGG 272260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309186782540